PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00088533001
Common NameGSBRNA2T00088533001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 247aa    MW: 27973.4 Da    PI: 4.3583
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00088533001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.17.6e-145699755
                         HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                           Er+RR+++N++++ Lr+++P+      +K++Ka+i + A+ YI+ Lq
  GSBRNA2T00088533001 56 VSERNRRQKLNQRLFALRSVVPNI-----TKMDKASIIKDAISYIQGLQ 99
                         57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.1774998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-1752115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.21E-135299No hitNo description
SMARTSM003533.2E-1455104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-1755115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-115699IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MENIDQEFNN YWEHNSFLQN EDFEYDSWPL EEAISGSYDS SSPDGAASSP ASKNIVSERN  60
RRQKLNQRLF ALRSVVPNIT KMDKASIIKD AISYIQGLQY EESKLEAEIR ELESTPKSCL  120
SFSKDFDPDL LVPVTSKKMK QLDSGSSRSL IEVIELKVTS MGERIMVVNV TCNKRTDTMV  180
KLCEVFESLN LKILTSNLNS FSGMIFNTLF IEADEEEQEV VRLKIETGIG AYNETQSPTW  240
SIDSLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-1454108963Transcription factor MYC2
5gnj_B4e-1454108963Transcription factor MYC2
5gnj_E4e-1454108963Transcription factor MYC2
5gnj_F4e-1454108963Transcription factor MYC2
5gnj_G4e-1454108963Transcription factor MYC2
5gnj_I4e-1454108963Transcription factor MYC2
5gnj_M4e-1454108963Transcription factor MYC2
5gnj_N4e-1454108963Transcription factor MYC2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.254430.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00088533001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0866660.0AY086666.1 Arabidopsis thaliana clone 266884 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126855.11e-180PREDICTED: transcription factor bHLH35-like
SwissprotQ2HIV91e-162BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A078IEW91e-180A0A078IEW9_BRANA; BnaA02g08320D protein
TrEMBLA0A3P6A2S21e-180A0A3P6A2S2_BRACM; Uncharacterized protein
STRINGBra020462.1-P1e-180(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63672745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-149bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]