PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00088515001

Common Name

GSBRNA2T00088515001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HD-ZIP

Protein Properties

Length: 157aa MW: 17912.1 Da PI: 7.9545

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00088515001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.8	1.8e-18	9	64	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r k+ ++t+eq++ Le++F n++++ + + +L++ lgL++rqV vWFqN+Ra+ k GSBRNA2T00088515001 9 RNKKKRLTQEQVRKLEKCFTLNNKLDPDLKLQLSNTLGLPQRQVAVWFQNKRARSK 64 567889************************************************99 PP
2	HD-ZIP_I/II	103.9	1.3e-33	10	102	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl++eqv+ LE++F+ ++kL+p+ K +l+++Lgl +rqvavWFqn+RAR kt+ lE +y L+++++a+ +++++Le++v+ L++e GSBRNA2T00088515001 10 NKKKRLTQEQVRKLEKCFTLNNKLDPDLKLQLSNTLGLPQRQVAVWFQNKRARSKTQSLELQYCNLQSKLEAVLSDKAKLEHQVQFLQDE 99 59**************************************************************************************** PP HD-ZIP_I/II 91 lke 93 lk+ GSBRNA2T00088515001 100 LKR 102 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.7E-18	4	69	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.99E-18	4	67	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.038	6	66	IPR001356	Homeobox domain
SMART	SM00389	1.2E-17	8	70	IPR001356	Homeobox domain
Pfam	PF00046	5.9E-16	9	64	IPR001356	Homeobox domain
CDD	cd00086	9.17E-15	9	67	No hit	No description
PROSITE pattern	PS00027	0	41	64	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MENPQGQSRN KKKRLTQEQV RKLEKCFTLN NKLDPDLKLQ LSNTLGLPQR QVAVWFQNKR 60 ARSKTQSLEL QYCNLQSKLE AVLSDKAKLE HQVQFLQDEL KRSRNQLALF THQDSPVDDS 120 NLGSCEEGND NQVVVFDELY DCFVTNGHGS SSTSWA*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00088515001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013647117.1	1e-110	homeobox-leucine zipper protein ATHB-52-like
Refseq	XP_013647118.1	1e-110	homeobox-leucine zipper protein ATHB-52-like
Refseq	XP_013675515.1	1e-110	homeobox-leucine zipper protein ATHB-52-like
Refseq	XP_022551114.1	1e-110	homeobox-leucine zipper protein ATHB-52-like
Swissprot	Q9FN29	5e-93	ATB52_ARATH; Homeobox-leucine zipper protein ATHB-52
TrEMBL	A0A078JVD7	1e-110	A0A078JVD7_BRANA; BnaCnng64030D protein
STRING	Bo2g042250.1	1e-101	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12107	26	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	2e-95	homeobox protein 52

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]