PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00088382001
Common NameGSBRNA2T00088382001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 619aa    MW: 71367.1 Da    PI: 6.5329
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00088382001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS351.11.7e-1072416152373
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                          ++lL++cA+a+s+gd++ a  lL ++++ +sp gd+ qRla++f++AL+arl + ++ +    ++ ++ +++ s+ l+a++++   sP++
  GSBRNA2T00088382001 241 RTLLTHCAQAISTGDKTTALDLLLQIRQDSSPMGDASQRLAHCFANALEARLRG-SPVIQTYYNAITSLKETASDILKAYRVYLSSSPFV 329
                          689**************************************************9.444444446666666679***************** PP

                 GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179
                          ++ ++   ++Il+a++ +e +Hi+Df+i +G+QWp ++q ++ R++ p +lRiTg++ p+ g   +e++eetg+rLa+++++++vpfe++
  GSBRNA2T00088382001 330 TLMYFFSFRMILDAAKDAEVLHIVDFGILYGFQWPMFIQYMSGRKDVPRKLRITGIELPQRGlrPAERIEETGRRLAEYCKRFNVPFEYK 419
                          *************************************************************9**************************** PP

                 GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          +++++++e+++l+e++++pgE+laVn  l+l++l de++  e  +rd+vLkl+++++P+v+v++  + + n++ F  rf ea+++y alf
  GSBRNA2T00088382001 420 AIASQHWETIRLDEFNIRPGEVLAVNAGLRLKTLQDETGGEETcPRDAVLKLIRKMNPDVFVHAIVNGSFNAPFFISRFKEAVYHYYALF 509
                          *9999**********************************999999********************************************* PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgs 357
                          d+++++lpr+++eri  Ere+ gre++nv+ace+ +r+er et+++W+ r+ +aGFk+ p+++++++  +  l+k    + + v+e+s++
  GSBRNA2T00088382001 510 DMFDSTLPRDNQERIRFEREFYGREAMNVIACEEGDRVERPETYRQWQVRMVRAGFKQKPVRDEIVELFREKLKKWRyHKDFVVDENSKW 599
                          **************************************************************************9998999********* PP

                 GRAS 358 lvlgWkdrpLvsvSaW 373
                          l++gWk+r+L++ S+W
  GSBRNA2T00088382001 600 LLQGWKGRTLYASSCW 615
                          **************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.908214595IPR005202Transcription factor GRAS
PfamPF035145.9E-105241615IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MDPNLSLNLN AFEYLDESLF LDSSPSFDFD RNPSFLADPT EEPDENDSST TLLRYVTQIL  60
MEESAGDKQS MFYDSLALRK TEEMLQQVIT DSKAHSATSG SIGSSSSSWS SSVPVHEIVV  120
RSMFSDAESD LQFRRGLEEA RKFLPNSDQW VFNLEKPAVQ VIKEERVKKS HQREVLDLEE  180
QVRSSKQSAT NVEDVEVTDM FDKVLLLDGQ CDPQTLSSQE TMSNKKKKKK KKKKSQVIDF  240
RTLLTHCAQA ISTGDKTTAL DLLLQIRQDS SPMGDASQRL AHCFANALEA RLRGSPVIQT  300
YYNAITSLKE TASDILKAYR VYLSSSPFVT LMYFFSFRMI LDAAKDAEVL HIVDFGILYG  360
FQWPMFIQYM SGRKDVPRKL RITGIELPQR GLRPAERIEE TGRRLAEYCK RFNVPFEYKA  420
IASQHWETIR LDEFNIRPGE VLAVNAGLRL KTLQDETGGE ETCPRDAVLK LIRKMNPDVF  480
VHAIVNGSFN APFFISRFKE AVYHYYALFD MFDSTLPRDN QERIRFEREF YGREAMNVIA  540
CEEGDRVERP ETYRQWQVRM VRAGFKQKPV RDEIVELFRE KLKKWRYHKD FVVDENSKWL  600
LQGWKGRTLY ASSCWVPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-422446158374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224233KKKKKKKKKK
2225233KKKKKKKKK
3227233KKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00088382001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013647712.10.0scarecrow-like protein 34 isoform X2
SwissprotP0C8840.0SCL34_ARATH; Scarecrow-like protein 34
TrEMBLA0A078ICN30.0A0A078ICN3_BRANA; BnaA07g14220D protein
STRINGBra028391.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29065.10.0GRAS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]