PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00088324001 | ||||||||
Common Name | GSBRNA2T00088324001, LOC106366474 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 306aa MW: 33300.4 Da PI: 9.1922 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.9 | 2.6e-18 | 119 | 169 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p + r r++lg++ tae Aa a+++a+ kl+ge GSBRNA2T00088324001 119 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYETAEAAAYAYDRAAYKLRGE 169 59******9.**********954...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.30E-16 | 118 | 178 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.4E-31 | 119 | 177 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.6E-36 | 119 | 182 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.235 | 119 | 176 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.01E-22 | 119 | 176 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.0E-10 | 120 | 131 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-12 | 120 | 169 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-10 | 142 | 158 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MEEHNYHFQT NLSPKISEIR ASLSQIILAG GPNTLDSVFS FLATSSATAS LNTLNPPPPQ 60 LGSSVYLHQR DLIESFHLQN RAISTPPPLF SSSFDHQSSP AAAFAAALAA GRTAKKKKLY 120 RGVRQRHWGK WVAEIRLPQN RMRVWLGTYE TAEAAAYAYD RAAYKLRGEY ARLNFPNLKD 180 PSELLGLGDS SKLIALKNAV DGKIQSICQR VRRERAKKSG KGSKDSSSSS PGTLSSPAAT 240 ATAVDSEDSY WNSKNSSPAS VSISDEMPAT TTAAAEEDMM MDTEGFLLAR MPSFDPELIW 300 EVLAN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-20 | 116 | 176 | 2 | 63 | ATERF1 |
3gcc_A | 5e-20 | 116 | 176 | 2 | 63 | ATERF1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.4337 | 1e-159 | seed |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00088324001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC066689 | 1e-140 | AC066689.5 Arabidopsis thaliana chromosome 1 BAC F15H21 genomic sequence, complete sequence. | |||
GenBank | AK228763 | 1e-140 | AK228763.1 Arabidopsis thaliana mRNA for AP2-containing DNA-binding protein, complete cds, clone: RAFL16-09-E15. | |||
GenBank | AY560876 | 1e-140 | AY560876.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g64380) mRNA, complete cds. | |||
GenBank | BT033082 | 1e-140 | BT033082.1 Arabidopsis thaliana unknown protein (At1g64380) mRNA, complete cds. | |||
GenBank | CP002684 | 1e-140 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013661527.1 | 0.0 | ethylene-responsive transcription factor ERF061 | ||||
Swissprot | Q9C7W2 | 1e-133 | ERF61_ARATH; Ethylene-responsive transcription factor ERF061 | ||||
TrEMBL | A0A078IAD3 | 0.0 | A0A078IAD3_BRANA; BnaA09g12290D protein | ||||
STRING | Bra027736.1-P | 1e-176 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4174 | 25 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64380.1 | 1e-103 | ERF family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106366474 |
Publications ? help Back to Top | |||
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