PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00088312001

Common Name

GSBRNA2T00088312001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 823aa MW: 91476.4 Da PI: 5.5175

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00088312001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.4	3.4e-29	546	596	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ GSBRNA2T00088312001 546 EKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 596 79***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.45	535	616	IPR003035	RWP-RK domain
Pfam	PF02042	2.7E-26	548	596	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.29E-21	709	807	No hit	No description
PROSITE profile	PS51745	19.789	718	804	IPR000270	PB1 domain
SMART	SM00666	2.0E-23	718	804	IPR000270	PB1 domain
CDD	cd06407	4.98E-33	719	803	No hit	No description
Pfam	PF00564	1.2E-17	719	803	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.0E-25	719	804	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 823 aa Download sequence Send to blast
MELDDLDLGS SWPLDQISFA SSNFRFPSSD QPFSPLWSFS SADGGAGELC SAPTLLTDYS 60 LLLASSESET ATKDNHLLPS PSWGVQMPLE NPDTYCAIKA KMTQALRFFK ESTGQQHLLA 120 QVWAPVKNRN GRYLLTTSGQ PFFLGPNSNG LNQYRMVSLT YMFSLDSERD GELGLPGRVF 180 RKKLPEWTPN VQYYSSKEFS RLGHALNYNV QGTLALPVFE PSRQLCVGVV ELIMTSPKIN 240 YAPEVEKVCK ALEAVNLKTS EILNPESTQI CNEGRQNALA EILEILTVVC ETYKLPLAQT 300 WVPCRHRSVL AFGGGFKKSC SSFDGSCMGK VCMSTSDLAV YVVDAHVWGF RDACAEHHLQ 360 KGQGVAGRAF LSENLCFSRD VTRFCKTDYP LVHYARMFKL TSCFAVCLKS TYTGDDEYVL 420 EFFLPPGVTD EGEQDSLLGS LFQTMKQHYS SLKVVSGTEL FENEMSIEVV EASEEGMVYS 480 KREPIQISIS KDYLELNAPE EKLSLNPDLV ENNEVANGFE RFQTANPSPE EAKTEKKTER 540 KRGKTEKTIS LEVLQQYFAG SLKDAAKSLG VCPTTMKRIC RQHGISRWPS RKINKVNRSL 600 TRLKHVIDSV QGADGSINLT SLSPRPWQVS QPPPPPTTGS PTNYIKLENR DAEDSAGSST 660 SRASCKVSPI SETRFRLLTQ NQEAFKQTAF DESDSTSKNI ANFWTSQDTT TLLHNNKLVS 720 IKATYREDII RFKISPESIS IAELKEQVAK RLKLETGAFE LKYLDDDKEW VSVSCDADLS 780 ECLDTSSVVT AAKANTLRLS VHDVTPNFGS SCESSEETMM CL*

Sequence ? help Back to Top

Protein Sequence Length: 823 aa Download sequence Send to blast

MELDDLDLGS SWPLDQISFA SSNFRFPSSD QPFSPLWSFS SADGGAGELC SAPTLLTDYS  60
LLLASSESET ATKDNHLLPS PSWGVQMPLE NPDTYCAIKA KMTQALRFFK ESTGQQHLLA  120
QVWAPVKNRN GRYLLTTSGQ PFFLGPNSNG LNQYRMVSLT YMFSLDSERD GELGLPGRVF  180
RKKLPEWTPN VQYYSSKEFS RLGHALNYNV QGTLALPVFE PSRQLCVGVV ELIMTSPKIN  240
YAPEVEKVCK ALEAVNLKTS EILNPESTQI CNEGRQNALA EILEILTVVC ETYKLPLAQT  300
WVPCRHRSVL AFGGGFKKSC SSFDGSCMGK VCMSTSDLAV YVVDAHVWGF RDACAEHHLQ  360
KGQGVAGRAF LSENLCFSRD VTRFCKTDYP LVHYARMFKL TSCFAVCLKS TYTGDDEYVL  420
EFFLPPGVTD EGEQDSLLGS LFQTMKQHYS SLKVVSGTEL FENEMSIEVV EASEEGMVYS  480
KREPIQISIS KDYLELNAPE EKLSLNPDLV ENNEVANGFE RFQTANPSPE EAKTEKKTER  540
KRGKTEKTIS LEVLQQYFAG SLKDAAKSLG VCPTTMKRIC RQHGISRWPS RKINKVNRSL  600
TRLKHVIDSV QGADGSINLT SLSPRPWQVS QPPPPPTTGS PTNYIKLENR DAEDSAGSST  660
SRASCKVSPI SETRFRLLTQ NQEAFKQTAF DESDSTSKNI ANFWTSQDTT TLLHNNKLVS  720
IKATYREDII RFKISPESIS IAELKEQVAK RLKLETGAFE LKYLDDDKEW VSVSCDADLS  780
ECLDTSSVVT AAKANTLRLS VHDVTPNFGS SCESSEETMM CL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00088312001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009124666.1	0.0	PREDICTED: protein NLP6 isoform X1
Swissprot	Q8RWY4	0.0	NLP6_ARATH; Protein NLP6
TrEMBL	A0A078IEQ5	0.0	A0A078IEQ5_BRANA; BnaA09g12180D protein
STRING	Bra040914.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2507	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Publications ? help Back to Top
Liseron-Monfils C, et al. Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs. Plant Signal Behav, 2014. [PMID:24270626] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968]