PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00088089001 | ||||||||
Common Name | GSBRNA2T00088089001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 326aa MW: 36108.9 Da PI: 9.6721 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 383.4 | 3.6e-117 | 1 | 325 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye...pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnklla 83 mdd g+r+ r+k+ + + ++ +s+ +q+ms+iaerda+i+ernla+se+k+avaerdmaflqrd+a+aern+a++erd++l a GSBRNA2T00088089001 1 MDDGGHRDngRHKApQGQwmmQHqPSM-----KQVMSIIAERDAAIQERNLAISERKSAVAERDMAFLQRDTAIAERNNAIMERDSALSA 85 999999888888873211222222444.....5********************************************************* PP GAGA_bind 84 lllvensla.........salpvgvqvlsgtksidslqqlse....pqledsavelreeeklealpieeaaeeakekkkkkk.rqrakkp 159 l+++ens+a a+p+g+q+ +g+k+i++ q++++ ql+d+a++ e+++++ lp++ + +a +++k+k+ ++r k+p GSBRNA2T00088089001 86 LQYRENSMAtpsavsnmaAACPPGCQMPRGVKHIHHPQMHQHqhhmLQLSDHAYD--ESREMDGLPTSPPPGTALDSAKPKRgGKRVKDP 173 *******999*****99999*****************996665778899999999..555566778888888887777766526999*** PP GAGA_bind 160 kekkakkkkkksekskkkvkkesader........skaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiS 240 k+++++ ++k+++k+ +k++ + +e+ sk+++ks+++ +ln+v +De+t+P+PvCsCtG lrqCYkWGnGGWqS+CCtttiS GSBRNA2T00088089001 174 KATTKTTANKRGPKNPRKTTLDYGEEEtsklvltgSKSDWKSQEMvGLNQVVYDETTMPPPVCSCTGDLRQCYKWGNGGWQSSCCTTTIS 263 ***99999998888877777666554458999999**********88******************************************* PP GAGA_bind 241 vyPLPvstkrrgaRiagrKmSqgafkklLekLaaeG.ydlsnpvDLkdhWAkHGtnkfvtir 301 +yPLP+ +++r+aR++grKmS++af+klL++LaaeG +dlsnpvDLkdhWAkHGtn+++ti+ GSBRNA2T00088089001 264 MYPLPALPNKRHARVGGRKMSGSAFNKLLSRLAAEGhHDLSNPVDLKDHWAKHGTNRYITIK 325 ************************************88***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 1.0E-163 | 1 | 325 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 9.6E-100 | 1 | 325 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MDDGGHRDNG RHKAPQGQWM MQHQPSMKQV MSIIAERDAA IQERNLAISE RKSAVAERDM 60 AFLQRDTAIA ERNNAIMERD SALSALQYRE NSMATPSAVS NMAAACPPGC QMPRGVKHIH 120 HPQMHQHQHH MLQLSDHAYD ESREMDGLPT SPPPGTALDS AKPKRGGKRV KDPKATTKTT 180 ANKRGPKNPR KTTLDYGEEE TSKLVLTGSK SDWKSQEMVG LNQVVYDETT MPPPVCSCTG 240 DLRQCYKWGN GGWQSSCCTT TISMYPLPAL PNKRHARVGG RKMSGSAFNK LLSRLAAEGH 300 HDLSNPVDLK DHWAKHGTNR YITIK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.17436 | 1e-155 | leaf| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00088089001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF529514 | 0.0 | EF529514.1 Brassica rapa subsp. pekinensis GAGA-binding transcriptional activator (BBR/BPC6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009104251.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6 | ||||
Refseq | XP_013648260.1 | 0.0 | protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_018508631.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6 | ||||
Swissprot | Q8L999 | 0.0 | BPC6_ARATH; Protein BASIC PENTACYSTEINE6 | ||||
TrEMBL | A0A078JVC6 | 0.0 | A0A078JVC6_BRANA; BnaCnng63620D protein | ||||
STRING | Bo6g076850.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6169 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42520.1 | 0.0 | basic pentacysteine 6 |
Publications ? help Back to Top | |||
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