PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00087979001

Common Name

GSBRNA2T00087979001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 393aa MW: 43126.4 Da PI: 6.5939

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00087979001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.7	1.6e-10	186	244	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ l e+ GSBRNA2T00087979001 186 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLTLLQRDTNGLSVEN 244 9********************************************99998877776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.1E-15	182	246	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.657	184	247	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.74E-11	186	237	No hit	No description
Gene3D	G3DSA:1.20.5.170	9.7E-11	186	240	No hit	No description
Pfam	PF00170	4.9E-9	186	238	IPR004827	Basic-leucine zipper domain
CDD	cd14703	6.24E-25	187	236	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MDKEKSPSGG LPPPSGRYSS FPHLTPPPSG SSDANRFSHD ISRMPDNPPK NLGHRRAHSE 60 ILTLPDDLSF DSDLGVVGGA ADGPSFSDDA DEDLMSMYLD MDKFNSSASS SCEPAELVWR 120 NELGSTTTPG GGGGSSERPR IRHQHSQSMD GSTSLMSGSE DVSGGVDSKK AISAAKLSEL 180 ALIDPKRAKR IWANRQSAAR SKERKMRYIA ELERKVQTLQ TEATTLSAQL TLLQRDTNGL 240 SVENHELKLR VQTVEQQVHL QDALNDALKE EVQHLKVLTG QGVSNGGASS VMNYGSFGSS 300 NQQFYTNNQS RHTMQAAQQF QQLQIHSQKQ QQQQQFQFQQ QQQLYQLQLQ QQRIQQQEQQ 360 SGGAEPRRPM SSSGQKESAT SSPDLEFPST KN*

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MDKEKSPSGG LPPPSGRYSS FPHLTPPPSG SSDANRFSHD ISRMPDNPPK NLGHRRAHSE  60
ILTLPDDLSF DSDLGVVGGA ADGPSFSDDA DEDLMSMYLD MDKFNSSASS SCEPAELVWR  120
NELGSTTTPG GGGGSSERPR IRHQHSQSMD GSTSLMSGSE DVSGGVDSKK AISAAKLSEL  180
ALIDPKRAKR IWANRQSAAR SKERKMRYIA ELERKVQTLQ TEATTLSAQL TLLQRDTNGL  240
SVENHELKLR VQTVEQQVHL QDALNDALKE EVQHLKVLTG QGVSNGGASS VMNYGSFGSS  300
NQQFYTNNQS RHTMQAAQQF QQLQIHSQKQ QQQQQFQFQQ QQQLYQLQLQ QQRIQQQEQQ  360
SGGAEPRRPM SSSGQKESAT SSPDLEFPST KN*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.12869	0.0	microspore

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed constitutively at a low level in young seedlings and in roots, stems and leaves of mature plants.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00087979001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009119093.1	0.0	PREDICTED: probable transcription factor PosF21
Swissprot	Q04088	1e-165	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A078IEV2	0.0	A0A078IEV2_BRANA; BnaA10g04020D protein
STRING	Bra015471.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2445	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-146	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]