PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00087837001
Common NameGSBRNA2T00087837001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 316aa    MW: 34896 Da    PI: 5.1587
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00087837001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.77.1e-19110160155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          ++y+GVr+++ +g+W+AeIrdp     r  r +lg+f taeeAa  ++ a+ +l+g
  GSBRNA2T00087837001 110 KKYRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTFNTAEEAALVYDSAAIQLRG 160
                          59********.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.23E-34110170No hitNo description
PROSITE profilePS5103224.329111168IPR001471AP2/ERF domain
PfamPF008472.0E-12111160IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-22111169IPR016177DNA-binding domain
SMARTSM003801.7E-38111174IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-31111169IPR001471AP2/ERF domain
PRINTSPR003671.1E-10112123IPR001471AP2/ERF domain
PRINTSPR003671.1E-10134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
METEKQLVLP KIKFAEHKTN TVPELTNNHQ PRILRISVAD PDATDSSSDE EEQRLTSKRR  60
RIKKFVNEVV LDTGASGCSS QIESKKRRKR AVVVKSETPS PPEVSKTTEK KYRGVRQRPW  120
GKWAAEIRDP LRRVRLWLGT FNTAEEAALV YDSAAIQLRG PDALTNFPTT EIKSSSPPPS  180
PVKRKRKIKD DVASSSTCSD GLCSPVSVLR SPFAVDSSTP TAAVIVKEEP STTTASETFS  240
DFSAPLFTDE DLFDFRSSVV PDYLGGDLFG EDLFADTCTD MNFGFDFGSG LSDWHVDDHF  300
QDIGDLFGSD PLLTV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-22110168160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-22110168463ATERF1
3gcc_A4e-22110168463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15761KRRRI
28488KKRRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00087837001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137370.10.0PREDICTED: ethylene-responsive transcription factor CRF2-like
SwissprotQ9SUQ21e-152CRF2_ARATH; Ethylene-responsive transcription factor CRF2
TrEMBLA0A078IEQ20.0A0A078IEQ2_BRANA; BnaA01g13420D protein
TrEMBLA0A398ALG70.0A0A398ALG7_BRACM; Uncharacterized protein
TrEMBLM4DB700.0M4DB70_BRARP; Uncharacterized protein
STRINGBra013730.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.21e-147cytokinin response factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Ckurshumova W,Berleth T
    Overcoming recalcitrance - Auxin response factor functions in plant regeneration.
    Plant Signal Behav, 2015. 10(7): p. e993293
    [PMID:26098229]
  5. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]
  6. Jeon J,Cho C,Lee MR,Van Binh N,Kim J
    CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis.
    Plant Cell, 2016. 28(8): p. 1828-43
    [PMID:27432872]