PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00087586001 | ||||||||
Common Name | GSBRNA2T00087586001, LOC106354496 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TALE | ||||||||
Protein Properties | Length: 517aa MW: 58953 Da PI: 6.8065 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.9 | 4.6e-10 | 357 | 394 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+++e+ LAk++gL+++qV +WF N R + GSBRNA2T00087586001 357 FEHflHPYPKESEKIMLAKQTGLSKNQVANWFINARVR 394 665559******************************88 PP | |||||||
2 | BELL | 125.7 | 1.8e-40 | 220 | 291 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+kk+kLl++ +eVdkrY+qy++q+++v+ssFe+vag+g+akpYts+Al++iSrhFrcL+dai+eqi GSBRNA2T00087586001 220 ERQELQSKKNKLLTMADEVDKRYNQYYHQMEAVASSFEMVAGHGAAKPYTSVALNRISRHFRCLRDAIKEQI 291 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 7.6E-53 | 149 | 289 | IPR006563 | POX domain |
Pfam | PF07526 | 6.5E-49 | 155 | 287 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.503 | 335 | 398 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.55E-11 | 338 | 399 | No hit | No description |
SMART | SM00389 | 6.5E-10 | 338 | 402 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.7E-18 | 339 | 406 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-28 | 341 | 404 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 6.4E-18 | 355 | 394 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 517 aa Download sequence Send to blast |
MAVYYPTSVG MQPLYQESIY LNEQQQQQQA SSSSAASFSG GGGGLDIPNS DGGVRHEMVF 60 IPPTNDVVVT GLNESSSNDL SFQGGGLSLS LGNQIQYHYQ NLSNQLNYSN DENGKSLSHH 120 HHQHQAEQLP STGYSNGVGY YNNYRYETSG FVSSVLRSRY LKPTQQLLDE VVSVRKDMKL 180 GESNKKTKNN NNDKGQDFTN GPNNNNTENE KFPEELSPQE RQELQSKKNK LLTMADEVDK 240 RYNQYYHQME AVASSFEMVA GHGAAKPYTS VALNRISRHF RCLRDAIKEQ IQVIRGKLGE 300 KETSEEQGER IPRLRYLDQR LRQQRALHQQ LGMVRPSWRP QRGLPENSVS ILRAWLFEHF 360 LHPYPKESEK IMLAKQTGLS KNQVANWFIN ARVRLWKPMI EEMYKEEFGD ASELLSNSNR 420 DKNKMQETSQ LKHEDSYSSQ QHHQGNNNNN IAYTSAVEEN LVFTDPKPDR VTTTGDYDSL 480 MNYQGFGVDD YNRYIGLGNQ QDGRFSNPHQ LHDFVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 6e-16 | 344 | 402 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 6e-16 | 344 | 402 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.6640 | 0.0 | seed |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:16513846}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00087586001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189493 | 0.0 | AC189493.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084P16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013649900.1 | 0.0 | BEL1-like homeodomain protein 3 | ||||
Swissprot | Q9FWS9 | 0.0 | BLH3_ARATH; BEL1-like homeodomain protein 3 | ||||
TrEMBL | A0A078IDU9 | 0.0 | A0A078IDU9_BRANA; BnaAnng09220D protein | ||||
STRING | Bra015845.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3820 | 19 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75410.2 | 0.0 | BEL1-like homeodomain 3 |
Link Out ? help Back to Top | |
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Entrez Gene | 106354496 |
Publications ? help Back to Top | |||
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