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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
GSBRNA2T00087518001 |
| Common Name | GSBRNA2T00087518001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family |
C3H |
| Protein Properties |
Length: 569aa MW: 60530.3 Da PI: 9.6627 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSBRNA2T00087518001 | genome | Genoscope | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 21.4 | 4.3e-07 | 544 | 567 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25
+++ C+f++++G C+ G+ C++ H
GSBRNA2T00087518001 544 GQRVCKFHRENGNCRKGAACTYLH 567
6899******************** PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 569 aa
Download sequence Send
to blast |
MDPDYESEDE DEKEEKEKEK SLRRRSSSFN RRGRDPISPR KGGFSSNESW TGTSNYSSTS 60
ANRELSRSYS GRGSNGRGDY LGSSDDKPAP KSNESEKMWH YKDPSGKVQG PFSMAQLRKW 120
NNTGYFPAKL EIWKANESSL DSVLLTDALA GLFQKQGQSV DNSYTKAYSG QSSQSEPNIG 180
SSARTAPSVL DIPKNSQDTW SSGGSLPSPT PTQMTTPTAK RRSFESRWSP TKPSAQSAVQ 240
SMSFPSAQSV PSQASRTDIP VVVNTASALQ PGTHPIPTPD RANVSVNHYG SSGPLPSPTP 300
VGGMQSWGNM QTDKFDLHGR GRGDAPFSSQ NSSASYGTTT PSALTSQSQP GFPASDPWRA 360
PVPSQSNTQT QAPAWAMNTS QNSGQPQAPT NQNSSWGQAT VVNPNMGWAG PPQAGMSVNW 420
AASSVPPTGQ GMPNPGWGGP AQVQQPQAYP NSGWGVTGQA QSQAQVQAPG SSTSSGWMQT 480
GQGMQSGNSN QNWGTQNQTA MPSGGSGGNQ TGYWGNQQNQ NGDSGYGWNR QSSGSGGHNN 540
NFKGQRVCKF HRENGNCRKG AACTYLHN*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, mostly in the vasculature and shoot apices of young seedlings. {ECO:0000269|PubMed:22940247}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Plays a central role in integrating RNA silencing and chromatin signals in 21 nt siRNA-dependent DNA methylation on cytosine pathway leading to transcriptional gene silencing of specific sequences. Involved in a chromatin-based RNA silencing pathway that encompasses both post-transcriptional gene silencing (PTGS) (e.g. RDR1, RDR6 and AGO2) and transcriptional gene silencing (TGS) (e.g. siRNA-dependent DNA methylation and histone H3) components. Mediates siRNA accumulation at specific chromatin loci. Binds H3K4me0 through its PHD to enforce low levels of H3K4 methylation and gene silencing at a subset of genomic loci. {ECO:0000269|PubMed:22940247}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT2G16485.1 | 0.0 | nucleic acid binding;zinc ion binding;DNA binding |
