PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00087424001 | ||||||||
Common Name | GSBRNA2T00087424001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 232aa MW: 25391.8 Da PI: 5.7227 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.3 | 1.2e-31 | 24 | 82 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY++eHnh+ GSBRNA2T00087424001 24 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPNMLVITYTSEHNHP 82 699************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.3E-32 | 17 | 84 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.361 | 18 | 84 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.79E-27 | 21 | 84 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-38 | 23 | 83 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-26 | 25 | 82 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
GKKVVCIPAP AAINSRSSGE VVPSDLWAWR KYGQKPIKGS PYPRGYYRCS SSKGCPARKQ 60 VERSRTDPNM LVITYTSEHN HPWPTQRNAL AGSTRSSISS SSNPSSKSLT SIATATTSSS 120 SRVSQNKDEP NKSHLASSST PPSPYVAAAV KEEDVEERQN KMEFDNDPDN TYRPEFQHQP 180 EGFFADLDEL EEDSLTMLLS QGFSGGGNLE NKTTIPDVFS DFFDDDSSRS L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 2e-26 | 2 | 85 | 6 | 80 | Disease resistance protein RRS1 |
5w3x_D | 2e-26 | 2 | 85 | 6 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.29109 | 0.0 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00087424001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ012167 | 0.0 | FJ012167.1 Brassica napus WRKY35 transcription factor (WRKY35) mRNA, complete cds. | |||
GenBank | KC246578 | 0.0 | KC246578.1 Brassica napus WRKY transcription factor 35.1 (WRKY35.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009143736.1 | 1e-169 | PREDICTED: probable WRKY transcription factor 35 | ||||
Refseq | XP_022570538.1 | 1e-169 | probable WRKY transcription factor 35 | ||||
Swissprot | O64747 | 1e-112 | WRK35_ARATH; Probable WRKY transcription factor 35 | ||||
TrEMBL | A0A078JV98 | 1e-170 | A0A078JV98_BRANA; BnaAnng30430D protein (Fragment) | ||||
TrEMBL | A0A397ZHK1 | 1e-168 | A0A397ZHK1_BRACM; Uncharacterized protein | ||||
TrEMBL | M4CMF0 | 1e-168 | M4CMF0_BRARP; Uncharacterized protein | ||||
STRING | Bra005388.1-P | 1e-169 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3085 | 28 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34830.1 | 9e-97 | WRKY DNA-binding protein 35 |
Publications ? help Back to Top | |||
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