PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00087296001 | ||||||||
Common Name | GSBRNA2T00087296001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 222aa MW: 25059.5 Da PI: 6.6621 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.7 | 2.4e-14 | 72 | 124 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR++iNs f+ L ++lP + +skKls +++ + ++I +Lq GSBRNA2T00087296001 72 KKLKHNASERDRRKKINSLFSSLCSCLPAsD---QSKKLSIPQTVSRSLKHILELQ 124 5789*************************66...*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.68E-12 | 70 | 128 | No hit | No description |
SuperFamily | SSF47459 | 1.28E-15 | 71 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.687 | 71 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-11 | 72 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.7E-13 | 72 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.5E-9 | 77 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MCALVPPFFP NFGWPSTGEY ESYYLAGENL DNCTFFYFPV PETYRVVHQR NSLGVSISSA 60 GTGIDNSPVV NKKLKHNASE RDRRKKINSL FSSLCSCLPA SDQSKKLSIP QTVSRSLKHI 120 LELQEEVKKL IQKKEELLLR VSGQRAIEQQ PKIHNFSISN VLSGLEEDGI VLVDVSLSRS 180 QGERVFYTLH LQVDNIDNDK LNCTELSQMM LYLYEECGNS Y* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Roots. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00087296001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by OBP3, auxin and salicylic acid (SA). Repressed by jasmonic acid (JA), UV LIGHT, and heat treatments. Up regulated by iron deficiency in roots and leaves, as well as by nickel, high zinc or high copper treatments. Repressed by high iron, low copper and low zinc treatments. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:12887587, ECO:0000269|PubMed:17516080}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL138655 | 2e-62 | AL138655.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F24I3. | |||
GenBank | AL390921 | 2e-62 | AL390921.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T8M16. | |||
GenBank | CP002686 | 2e-62 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022574502.1 | 1e-145 | transcription factor ORG3-like | ||||
Swissprot | Q9M1K1 | 1e-114 | ORG2_ARATH; Transcription factor ORG2 | ||||
TrEMBL | A0A078I8Y5 | 1e-162 | A0A078I8Y5_BRANA; BnaC04g24680D protein | ||||
TrEMBL | A0A0D3BXE4 | 1e-162 | A0A0D3BXE4_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6BUL3 | 1e-162 | A0A3P6BUL3_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g112590.1 | 1e-163 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM482 | 28 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 1e-103 | bHLH family protein |