PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00087280001
Common NameGSBRNA2T00087280001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 291aa    MW: 31290.1 Da    PI: 9.9686
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00087280001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.65e-12219262547
                          CHHHCHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKka.eieeLeekvkeLeaeNkaLkk 47 
                          ++++r++kNRe+  rsR+RK++ +++eLe kv  Le+eN++L+ 
  GSBRNA2T00087280001 219 RKQKRMIKNRESVARSRARKQQaYTQELEIKVSRLEEENERLRR 262
                          689*****************7549******************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.3E-11212263No hitNo description
SMARTSM003389.7E-8215288IPR004827Basic-leucine zipper domain
PfamPF077166.0E-9216263IPR004827Basic-leucine zipper domain
CDDcd147071.18E-19219274No hitNo description
SuperFamilySSF579594.99E-7219265No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDSQREPKSH SLNRQGGSSL YSLTLDEVQT HLGGSGKALG SMNLDELLKS VCSVDVNGAA  60
AAAADTTQEG GGLSRQGSLT LPRDLSKKTV EQVWKDIQQN ANGSSGGANE RRGNNKEPTL  120
GEMTLEDLLL KAGVVTETVT GGGGGGGGGL GQNIPQAGPW VQYHQLPSMP QGQSFMPYPV  180
ADMQAMVSQT SLMGGLSDTQ TPGRKRVASG EVVEKTVERK QKRMIKNRES VARSRARKQQ  240
AYTQELEIKV SRLEEENERL RRQKEVEKIL PSAPPPDPKR QLRRTSSAPF *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231239ARSRARKQQ
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269|PubMed:15642716}.
UniprotTISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269|PubMed:12376636}.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00087280001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013631588.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1
RefseqXP_013742213.10.0ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1
SwissprotQ9LES31e-156AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBLA0A078IC220.0A0A078IC22_BRANA; BnaC04g24820D protein
STRINGBo4g112690.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18842883
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56850.11e-138ABA-responsive element binding protein 3
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Kim H, et al.
    ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis.
    Plant Mol. Biol., 2016. 90(3): p. 303-15
    [PMID:26667153]
  3. Song C,Kim T,Chung WS,Lim CO
    The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions.
    Mol. Cells, 2017. 40(8): p. 577-586
    [PMID:28756655]