PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00087046001
Common NameGSBRNA2T00087046001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 305aa    MW: 34718 Da    PI: 5.7645
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00087046001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.81.5e-5551311129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+++yL++kv++  +++ +++ +vd++k+ePwdLp k++ +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdk
  GSBRNA2T00087046001   5 LPPGFRFHPTDEELITHYLCRKVSDIGFTA-KAVVDVDLNKCEPWDLPDKASIGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKTTGKDK 93 
                          79*************************999.88***************99999************************************* PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          ++++ +g lvg+kktLvfykgrapkgek++Wvmheyrle
  GSBRNA2T00087046001  94 DIYR-SGVLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 131
                          ****.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-653151IPR003441NAC domain
PROSITE profilePS5100560.1975151IPR003441NAC domain
PfamPF023655.9E-296130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEENLPPGFR FHPTDEELIT HYLCRKVSDI GFTAKAVVDV DLNKCEPWDL PDKASIGEKE  60
WYFFSLRDRK YPTGLRTNRA TEAGYWKTTG KDKDIYRSGV LVGMKKTLVF YKGRAPKGEK  120
SNWVMHEYRL ENKQPFKPAK EEWVVCRVFQ KNTTTKKPQE QQPDSSFGSP CDADSSMANE  180
FEDIELPNLN SNSSTVDYNN IHQQYFQNNV YSDNTTSTAG LNMNMNMNMN MNMNMANLPA  240
WTTSLLGPPL SPINSLLLKA FQIRNSYNIN PSLLQQGVSN VMQDGSSSSQ PQPQDEAFNM  300
DSLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-59415716171NO APICAL MERISTEM PROTEIN
1ut4_B3e-59415716171NO APICAL MERISTEM PROTEIN
1ut7_A3e-59415716171NO APICAL MERISTEM PROTEIN
1ut7_B3e-59415716171NO APICAL MERISTEM PROTEIN
3swm_A4e-59415719174NAC domain-containing protein 19
3swm_B4e-59415719174NAC domain-containing protein 19
3swm_C4e-59415719174NAC domain-containing protein 19
3swm_D4e-59415719174NAC domain-containing protein 19
3swp_A4e-59415719174NAC domain-containing protein 19
3swp_B4e-59415719174NAC domain-containing protein 19
3swp_C4e-59415719174NAC domain-containing protein 19
3swp_D4e-59415719174NAC domain-containing protein 19
4dul_A3e-59415716171NAC domain-containing protein 19
4dul_B3e-59415716171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in leaves. {ECO:0000269|PubMed:17098808}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00087046001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266581e-82AB026658.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYF24.
GenBankCP0026861e-82CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013589211.10.0PREDICTED: NAC domain-containing protein 100
SwissprotQ9FLR34e-82NAC79_ARATH; NAC domain-containing protein 79
TrEMBLA0A078JRE70.0A0A078JRE7_BRANA; BnaCnng63190D protein
TrEMBLA0A0D3ACK90.0A0A0D3ACK9_BRAOL; Uncharacterized protein
STRINGBo1g117610.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55272649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.11e-166NAC domain containing protein 58
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Vidal EA,Álvarez JM,Gutiérrez RA
    Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function.
    Plant Signal Behav, 2014. 9(3): p. e28501
    [PMID:24642706]
  4. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  5. Lee MH,Jeon HS,Kim HG,Park OK
    An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
    New Phytol., 2017. 214(1): p. 343-360
    [PMID:28032643]