PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00086451001
Common NameGSBRNA2T00086451001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 306aa    MW: 34227.4 Da    PI: 7.3162
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00086451001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.7e-071159248
                         SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
                         ++W+ ++d  + +a   +  +   +W++Ia  ++  +tl q+++++ ++l
  GSBRNA2T00086451001 11 LSWSRDDDIAFERALVVYTDEtdnRWEKIADSVP-EKTLAQVIEHYKSLL 59
                         58*****************99*************.9**********9875 PP
2Myb_DNA-binding45.32.1e-14103147347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+ E+ +++ + k++G+g+W++I+r++ ++Rt+ q+ s+ qky
  GSBRNA2T00086451001 103 PWTPLEHSQFLLGLKKYGKGDWRSISRHIVLTRTPTQVASHAQKY 147
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.855862IPR017884SANT domain
SMARTSM007172.6E-8961IPR001005SANT/Myb domain
CDDcd001672.35E-71259No hitNo description
SuperFamilySSF466892.37E-101267IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.3E-41360IPR009057Homeodomain-like
PROSITE profilePS5129415.8195152IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-1096151IPR009057Homeodomain-like
SuperFamilySSF466896.6E-1597152IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-14100150IPR006447Myb domain, plants
SMARTSM007174.0E-11100150IPR001005SANT/Myb domain
CDDcd001676.82E-10103148No hitNo description
PfamPF002491.3E-11103147IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MIISEKTGGG LSWSRDDDIA FERALVVYTD ETDNRWEKIA DSVPEKTLAQ VIEHYKSLLH  60
DVMMIESGIV PLPDYNDVTI ETNVRERSIG EHEPKPKRRK AVPWTPLEHS QFLLGLKKYG  120
KGDWRSISRH IVLTRTPTQV ASHAQKYFAR HRATNRSRQR HNIHDVNVSE SSNISAMKAP  180
ITCQDAQAAS QPSVDHQAYE TPAIWNTEAT SPTPLDHHVF GTPTIWNMQA ASHPSVNVHV  240
YGAPTIGQSM VGRYVLPYGA DMNPFAPPYM AYGAQHHSTP YSPVPSAPFN TWTVPDNMTN  300
IPTSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-13875673RADIALIS
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00086451001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013722631.10.0transcription factor SRM1-like
TrEMBLA0A078I9Z70.0A0A078I9Z7_BRANA; BnaA02g32790D protein
STRINGBra029380.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133911628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23650.11e-100Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]