PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00086315001

Common Name

GSBRNA2T00086315001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 335aa MW: 37386.4 Da PI: 9.9088

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00086315001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	24.3	6.8e-08	203	240	17	54
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 A+rsR RK+++i eLe+ v++L+ae ++ el+ l++ GSBRNA2T00086315001 203 AQRSRVRKLQYISELERNVQTLQAEGSKVSAELDFLNQ 240 89**************************9999998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0073	192	251	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.34E-14	195	242	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.5E-7	203	245	No hit	No description
SuperFamily	SSF57959	7.74E-6	203	245	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MAGTKGSESV RSLMNPGKSA LLPPKIPFPS GSMGSRHSHK VSVEKAHQRT SSESHLVEEE 60 LPFWLDDLLN EPESPARKSG HRRSASDSYA YLDVANAATT ISDFSYRNPA ASIQRGIQEL 120 DPSQDASFYA DGSFLKQRNR PSGARPSWTR ESVGGGKHMG ASSYMSQDAT AETKRFSSEE 180 NNSNPQPGAY EADNTKRAKQ QFAQRSRVRK LQYISELERN VQTLQAEGSK VSAELDFLNQ 240 RNLILSLENK ALKHRLESIA QEKLIKQLEQ EVLEREIGRL RALHQQQQHT RQQSASHKRA 300 SSKDLDSQFS TLSLNAKDSN CRRDSLSVMG QFHF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00086315001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT003980	1e-152	BT003980.1 Arabidopsis thaliana clone RAFL15-22-D03 (R20596) putative bZIP family transcription factor (At1g58110) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013593065.1	0.0	PREDICTED: uncharacterized protein At4g06598 isoform X1
Swissprot	Q8W3M7	6e-44	Y4598_ARATH; Uncharacterized protein At4g06598
TrEMBL	A0A078IBX9	0.0	A0A078IBX9_BRANA; BnaC01g27680D protein
TrEMBL	A0A3P6FTC6	0.0	A0A3P6FTC6_BRAOL; Uncharacterized protein
STRING	Bo1g087780.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3360	24	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58110.2	1e-163	bZIP family protein

Publications ? help Back to Top
Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4. DNA Res., 2001. 8(6): p. 285-90 [PMID:11853315] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]