PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00086287001
Common NameGSBRNA2T00086287001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 831aa    MW: 92225.7 Da    PI: 6.9666
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00086287001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.31.5e-19177233157
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                          +++ +++t+ q++e+e++F+++++p+ ++r++L+++lgL+  qVk+WFqN+R+++k+
  GSBRNA2T00086287001 177 KKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELGLEPLQVKFWFQNKRTQMKN 233
                          688999************************************************995 PP
2START217.44.7e-683645772206
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                          la +a++el+++ ++ee +W++++  ++++e+ ++f+++ +     +++ea+r+s+vv+m++++ ve+l+d++ qW+  +a    +a tl
  GSBRNA2T00086287001 364 LAVAAMEELMRMTQVEESLWKSLV--LDEEEYARTFPRGIGskpagFRTEASRESAVVIMNHVNIVEILMDVN-QWSVVFAgmvsRAVTL 450
                          6789********************..************999********************************.**************** PP

                          EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEE CS
                START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvt 165
                          +v+s+g      galq+m+ae+q+++plvp R+ +f+Ry++q+ +g+w++vd+S+ds q++p     vR++++ Sg+li++++ng+skvt
  GSBRNA2T00086287001 451 AVLSTGvagnynGALQVMSAEFQVPTPLVPtRETYFARYCKQQADGSWAVVDISLDSLQPNPP----VRCRRRASGCLIQEMPNGYSKVT 536
                          **************************************************************8....*********************** PP

                          EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          wvehv++++r +h l++++v++++a+gak+wva l+rqce+
  GSBRNA2T00086287001 537 WVEHVEVDDRGVHDLYKHMVSTCHAFGAKRWVAILDRQCER 577
                          ***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-21155232IPR009057Homeodomain-like
SuperFamilySSF466895.01E-19169240IPR009057Homeodomain-like
PROSITE profilePS5007116.471174234IPR001356Homeobox domain
SMARTSM003891.6E-18175238IPR001356Homeobox domain
CDDcd000861.38E-18177235No hitNo description
PfamPF000463.8E-17177232IPR001356Homeobox domain
PROSITE patternPS000270209232IPR017970Homeobox, conserved site
PROSITE profilePS5084841.413354580IPR002913START domain
SuperFamilySSF559618.25E-32355579No hitNo description
CDDcd088752.81E-120358576No hitNo description
SMARTSM002342.4E-60363577IPR002913START domain
PfamPF018528.7E-61364577IPR002913START domain
Gene3DG3DSA:3.30.530.201.6E-4458542IPR023393START-like domain
SuperFamilySSF559611.65E-26596822No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 831 aa     Download sequence    Send to blast
MYYPIFYSKS CIYDNNVSHS HHLISLHPLN TLPLLSSPNF SSLFLRDLHL AFKLFDKKPL  60
DQYKTISGFP TNKSQATHGT LLSLPLGFRR VFLAMKKVKG LGFNFKCKKK MFEPNMFLAA  120
MNNEDSNNHN YNHEDNNNNN ERFLRDEEFD SANTKSGSEN QEGGSGNDQD NHHPNKKKRY  180
HRHTQLQIQE MEAFFKECPH PDDKQRKQLS RELGLEPLQV KFWFQNKRTQ MKNHHERHEN  240
SHLRAENEKL RGDNIRYREA LANASCPNCG GPTVIGEMSF DEHQLRLENA RLREEIDRIS  300
AIAAKYVGKP VSSYPLMSPP PLPPRPLELA MGNFGGDVYG NNPTDLFKSI TAPTESDKPL  360
IIDLAVAAME ELMRMTQVEE SLWKSLVLDE EEYARTFPRG IGSKPAGFRT EASRESAVVI  420
MNHVNIVEIL MDVNQWSVVF AGMVSRAVTL AVLSTGVAGN YNGALQVMSA EFQVPTPLVP  480
TRETYFARYC KQQADGSWAV VDISLDSLQP NPPVRCRRRA SGCLIQEMPN GYSKVTWVEH  540
VEVDDRGVHD LYKHMVSTCH AFGAKRWVAI LDRQCERLAS VMATNISSGE VGVITNQEGR  600
RSMLKLAERM VISFCAGVSA STAHTWTTLS GTGAEDVRVM TRKSVDDPGR PPGIVLSAAT  660
SFWIPVPPKR VFDFLRDENS RNEWDILSNG GVVQEMAHIA NGRDTGNCVS LLRVNSANSS  720
QSNMLILQES CTDPTASFVI YAPVDIVAMN IVLNGGDPDY VALLPSGFAI LPDGNATGGG  780
EGGSLLTVAF QILVDSVPTA KLSLGSVATV NNLIACTVER IKAAMSCETA *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.99871e-133seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00086287001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3167760.0AK316776.1 Arabidopsis thaliana AT1G05230 mRNA, complete cds, clone: RAFL09-78-H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013666552.10.0homeobox-leucine zipper protein HDG2 isoform X2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A078I9L90.0A0A078I9L9_BRANA; BnaA10g03260D protein
STRINGBra015401.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]