PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00086266001

Common Name

GSBRNA2T00086266001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 291aa MW: 32743.3 Da PI: 5.6899

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00086266001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	86.8	1.9e-27	108	166	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYG+K+vk++++ r+YY+C+s+gC+vkk+ver+ e+ +v++tYeg Hnhe GSBRNA2T00086266001 108 MDDGYKWRKYGKKSVKNNTNKRNYYKCSSEGCMVKKRVERDGENAAYVITTYEGVHNHE 166 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.4E-29	95	168	IPR003657	WRKY domain
SuperFamily	SSF118290	4.97E-26	100	168	IPR003657	WRKY domain
PROSITE profile	PS50811	28.656	103	168	IPR003657	WRKY domain
SMART	SM00774	1.5E-31	108	167	IPR003657	WRKY domain
Pfam	PF03106	7.9E-22	109	166	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MNPSQSPSPN FTFLSDENSI YSFMDNYDFS NLMFSVGEGG NNGLIQEETS SPTTFVTGES 60 GGSGSALTTL RKKESTSLDC KNRGSKDGET KEMGHRVAIR TRTKIDVMDD GYKWRKYGKK 120 SVKNNTNKRN YYKCSSEGCM VKKRVERDGE NAAYVITTYE GVHNHESPSH VYYSDMESEV 180 ARVSPEALFL LGLDWNRHAG DLIEQCENEG SVGRERERAD LGAIMWPKFE SLVVADSAGS 240 SWFRFRVSTD VIAGLVTWMI LDHGYGNKRK IWKEDYEEFL HAVVYKEDGT *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-23	96	168	2	74	WRKY transcription factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00086266001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430060	0.0	KF430060.1 Brassica rapa WRKY transcription factor 51 (WRKY51) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013619312.1	1e-127	PREDICTED: probable WRKY transcription factor 51 isoform X1
Swissprot	Q93WU9	1e-87	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	A0A078IBT8	0.0	A0A078IBT8_BRANA; BnaC02g43320D protein
TrEMBL	A0A0D3AYR2	0.0	A0A0D3AYR2_BRAOL; Uncharacterized protein
STRING	Bo2g166420.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5711	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	5e-90	WRKY DNA-binding protein 51

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]