PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00086174001
Common NameGSBRNA2T00086174001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 251aa    MW: 28990.3 Da    PI: 6.7097
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00086174001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.4e-1852104456
                          -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          + +++ eq+++Le+ Fe  ++++ e++ +LAk lg++ rq+ +WFqNrRa++k
  GSBRNA2T00086174001  52 KKRLQLEQVKVLEKSFELGNKLDPERKIQLAKALGMQPRQIAIWFQNRRARWK 104
                          4457889*********************************************9 PP
2HD-ZIP_I/II125.62.2e-4050142193
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ekk+rl+ eqvk+LE+sFe  +kL+perK +la++Lg+qprq+a+WFqnrRAR+kt+qlE+dy++Lk+++d+lk++n++L +++++L +e
  GSBRNA2T00086174001  50 EKKKRLQLEQVKVLEKSFELGNKLDPERKIQLAKALGMQPRQIAIWFQNRRARWKTRQLERDYDSLKKQFDSLKSDNDSLLAHNKKLLAE 139
                          69*************************************************************************************999 PP

          HD-ZIP_I/II  91 lke 93 
                          +++
  GSBRNA2T00086174001 140 VMS 142
                          875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.76E-1945108IPR009057Homeodomain-like
SMARTSM003891.7E-1749110IPR001356Homeobox domain
PROSITE profilePS5007116.08250106IPR001356Homeobox domain
CDDcd000862.30E-1651107No hitNo description
PfamPF000462.0E-1552104IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-1954114IPR009057Homeodomain-like
PRINTSPR000312.5E-57786IPR000047Helix-turn-helix motif
PROSITE patternPS00027081104IPR017970Homeobox, conserved site
PRINTSPR000312.5E-586102IPR000047Helix-turn-helix motif
PfamPF021831.8E-16107146IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
NLYIVLLVFI GGGNYMMNRS MSLTNVRDDP HQSVDEENLS DDGSHMMLGE KKKRLQLEQV  60
KVLEKSFELG NKLDPERKIQ LAKALGMQPR QIAIWFQNRR ARWKTRQLER DYDSLKKQFD  120
SLKSDNDSLL AHNKKLLAEV MSLRNKDYNE ASIIKREAEA SWSNNGSTEN SSDINLEIPR  180
ETTTTHVNTI KNLFPSSIPS STHHQDHHHQ NNEMVQEESF CNMFNGIDET TSAGYWGWSD  240
PNHNHHHQFN *
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed 3 day after germination (DAG) in first rosette leaf primordia around the veins in the apical part of the leaf and close to the midvein in the basal part of the leaf. At later stage, expressed in new forming veins, and veins and fascicular cambium of mature leaves. {ECO:0000269|PubMed:12644682}.
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00086174001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:12644682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2288900.0AK228890.1 Arabidopsis thaliana mRNA for putative homeobox-leucine zipper protein, complete cds, clone: RAFL16-20-K05.
GenBankAY0876310.0AY087631.1 Arabidopsis thaliana clone 3722 mRNA, complete sequence.
GenBankBT0292210.0BT029221.1 Arabidopsis thaliana At3g01220 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009147412.11e-180PREDICTED: homeobox-leucine zipper protein ATHB-20
RefseqXP_013640328.11e-180homeobox-leucine zipper protein ATHB-20
SwissprotQ8LAT01e-145ATB20_ARATH; Homeobox-leucine zipper protein ATHB-20
TrEMBLA0A078JSB80.0A0A078JSB8_BRANA; BnaAnng29920D protein (Fragment)
STRINGBra039135.1-P1e-179(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30952666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01220.11e-147homeobox protein 20
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]