PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00086145001
Common NameGSBRNA2T00086145001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 243aa    MW: 26628.5 Da    PI: 5.4461
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00086145001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.5e-10177222655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR ri +++ +L+el+P+     +k  + a++L +A +Y+k L+
  GSBRNA2T00086145001 177 SIAERVRRTRISDRIRRLQELVPNM----DKQTNTADMLDEALQYVKALE 222
                          689*********************7....688***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.284171221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-15174239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.70E-10175226No hitNo description
Gene3DG3DSA:4.10.280.107.5E-15176239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-11177227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-7177222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MQSTHDGGGK GGGGEVSRGG LSRIRSAPAN WIETLLQDDE EDDLKPNLCL TELLTGNSSG  60
ITSRNSFEFP SAVDQGLSTN QGGFHRQNSS PANFLGGSAA GSDGFFSNFG IPANYDYLPP  120
PNVDISPASK RSREFSSQLK EEQMSGGVSG MMEDKLLEDS VPFRVRAKRG CATHPRSIAE  180
RVRRTRISDR IRRLQELVPN MDKQTNTADM LDEALQYVKA LESQIQELTE QQKRCRCKNE  240
EN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1713GGKGGGG
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00086145001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013698951.11e-180transcription factor bHLH80-like
SwissprotQ9C8P81e-118BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A078JP271e-179A0A078JP27_BRANA; BnaCnng62790D protein
STRINGBo5g085170.11e-175(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51042551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.16e-93bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]