PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00086075001

Common Name

GSBRNA2T00086075001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NF-YB

Protein Properties

Length: 268aa MW: 29515.3 Da PI: 9.0832

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00086075001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	175.9	3.9e-55	93	184	1	92
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 vreqdrflPian+srimk+ lPan+ki+kdake+vqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy++plkvyl++y GSBRNA2T00086075001 93 VREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLTRY 182 69**************************************************************************************** PP NF-YB 91 re 92 re GSBRNA2T00086075001 183 RE 184 *8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.2E-50	89	185	IPR009072	Histone-fold
SuperFamily	SSF47113	8.69E-38	96	185	IPR009072	Histone-fold
Pfam	PF00808	4.8E-27	99	163	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.1E-20	127	145	No hit	No description
PROSITE pattern	PS00685	0	130	146	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	3.1E-20	146	164	No hit	No description
PRINTS	PR00615	3.1E-20	165	183	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MNQRGKEEKG GILNNKEKNE RFSISLVSQA SDQISPFSRS LFPASFPSSS NQHLSISLPP 60 FFRILLLMAE SQAKSPGGGE SGGDQSPRSS SHVREQDRFL PIANISRIMK RGLPANGKIA 120 KDAKEIVQEC VSEFISFITS EASDKCQREK RKTINGDDLL WAMATLGFED YIDPLKVYLT 180 RYRERVFGFH SLTLFFPFIF LRHELGTLQM EGDTKGSAKG GDANAKKDGQ SSQNGQFSQL 240 AHQGSFPQGP YGSSQGQHMM VPMPGTD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	5e-46	93	184	1	92	Transcription factor HapC (Eurofung)
4g92_B	5e-46	93	184	1	92	Transcription factor HapC (Eurofung)
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in flowers and mature rosettes. {ECO:0000269\|PubMed:11250072}.

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00086075001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189561	1e-113	AC189561.3 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH007P05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009133115.1	1e-122	PREDICTED: nuclear transcription factor Y subunit B-8
Refseq	XP_013738285.1	1e-122	nuclear transcription factor Y subunit B-8
Swissprot	Q8VYK4	1e-103	NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A078I9E0	0.0	A0A078I9E0_BRANA; BnaA03g16960D protein
STRING	Bra023095.1-P	1e-147	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1480	27	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37060.3	1e-106	nuclear factor Y, subunit B8

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]