PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00086064001
Common NameGSBRNA2T00086064001, LOC106443519
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 290aa    MW: 33035.1 Da    PI: 8.3724
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00086064001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-161462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         rg+W++eEd +l+d++++ G+g +W t +r+ g++R++k+c++rw++yl
  GSBRNA2T00086064001 14 RGPWSPEEDAKLKDYIEKQGTGgNWITLPRKAGLRRCGKSCRLRWLNYL 62
                         89*********************************************97 PP

2Myb_DNA-binding42.11.9e-1369111246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g +T+eEd ++  +++  G++ W+ Ia+++  gRt++++k++w++
  GSBRNA2T00086064001  69 GDFTEEEDNIICSLFASIGSR-WSVIAAHLH-GRTDNDIKNYWNT 111
                          789******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.182962IPR017930Myb domain
SuperFamilySSF466894.39E-2711109IPR009057Homeodomain-like
SMARTSM007173.3E-111364IPR001005SANT/Myb domain
PfamPF002493.3E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-231569IPR009057Homeodomain-like
CDDcd001673.09E-71662No hitNo description
PROSITE profilePS5129421.79763117IPR017930Myb domain
SMARTSM007179.9E-1267115IPR001005SANT/Myb domain
PfamPF002492.2E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-2470118IPR009057Homeodomain-like
CDDcd001676.34E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGRAPCCDKE NVKRGPWSPE EDAKLKDYIE KQGTGGNWIT LPRKAGLRRC GKSCRLRWLN  60
YLRPNIRHGD FTEEEDNIIC SLFASIGSRW SVIAAHLHGR TDNDIKNYWN TKLKKKLIAT  120
MAPPRHHHLS AIASSSSSSP SPSSHYNMIN SLLPYDPSIS TNQLITPHRG MMTMMGRQQQ  180
LLYQEDMGSL VNSLNSNKFA MSHQDDNQKQ STNKGIMLLS DVRSGSSTTS TVTRVKMEHH  240
DYHHEETERS MEGYEMDEIN HLISSSCTSS SNSLWFDESK REDKFMLYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-23141177108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous, with higher levels in roots, flowers, and shoot tips. Found in all cells of the shoot tips. {ECO:0000269|PubMed:16461581}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00086064001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6701180.0KJ670118.1 Brassica napus MYB transcription factor 38 (MYB38.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013740533.10.0transcription factor RAX2
SwissprotQ9SJL71e-140RAX2_ARATH; Transcription factor RAX2
TrEMBLA0A078IBY10.0A0A078IBY1_BRANA; BnaA03g16870D protein
TrEMBLA0A397ZW260.0A0A397ZW26_BRACM; Uncharacterized protein
STRINGBra023085.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.11e-136MYB family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]