PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00086064001 | ||||||||
Common Name | GSBRNA2T00086064001, LOC106443519 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 290aa MW: 33035.1 Da PI: 8.3724 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.2 | 1.4e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+d++++ G+g +W t +r+ g++R++k+c++rw++yl GSBRNA2T00086064001 14 RGPWSPEEDAKLKDYIEKQGTGgNWITLPRKAGLRRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 42.1 | 1.9e-13 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd ++ +++ G++ W+ Ia+++ gRt++++k++w++ GSBRNA2T00086064001 69 GDFTEEEDNIICSLFASIGSR-WSVIAAHLH-GRTDNDIKNYWNT 111 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.182 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.39E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.09E-7 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.797 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 9.9E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-12 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-24 | 70 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.34E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MGRAPCCDKE NVKRGPWSPE EDAKLKDYIE KQGTGGNWIT LPRKAGLRRC GKSCRLRWLN 60 YLRPNIRHGD FTEEEDNIIC SLFASIGSRW SVIAAHLHGR TDNDIKNYWN TKLKKKLIAT 120 MAPPRHHHLS AIASSSSSSP SPSSHYNMIN SLLPYDPSIS TNQLITPHRG MMTMMGRQQQ 180 LLYQEDMGSL VNSLNSNKFA MSHQDDNQKQ STNKGIMLLS DVRSGSSTTS TVTRVKMEHH 240 DYHHEETERS MEGYEMDEIN HLISSSCTSS SNSLWFDESK REDKFMLYY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-23 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous, with higher levels in roots, flowers, and shoot tips. Found in all cells of the shoot tips. {ECO:0000269|PubMed:16461581}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00086064001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ670118 | 0.0 | KJ670118.1 Brassica napus MYB transcription factor 38 (MYB38.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013740533.1 | 0.0 | transcription factor RAX2 | ||||
Swissprot | Q9SJL7 | 1e-140 | RAX2_ARATH; Transcription factor RAX2 | ||||
TrEMBL | A0A078IBY1 | 0.0 | A0A078IBY1_BRANA; BnaA03g16870D protein | ||||
TrEMBL | A0A397ZW26 | 0.0 | A0A397ZW26_BRACM; Uncharacterized protein | ||||
STRING | Bra023085.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36890.1 | 1e-136 | MYB family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106443519 |
Publications ? help Back to Top | |||
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