PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00085879001
Common NameGSBRNA2T00085879001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 384aa    MW: 44134.1 Da    PI: 4.9103
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00085879001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1087.4e-34611532103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y+++ed+++++++sws+ +nsf+v+d+e f+ ++Lp +Fkh+n++SFvRQLn+YgF+kv+ ++         weF+++ F +g+k
  GSBRNA2T00085879001  61 FLTKTYDLVEDSRTNHVVSWSQANNSFIVWDQEYFSMTLLPIFFKHNNLSSFVRQLNTYGFRKVNPDR---------WEFANEGFLRGQK 141
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++i+r+k++
  GSBRNA2T00085879001 142 HLLKTIRRRKTN 153
                          *********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467858.57E-3456150IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.8E-3657150IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.7E-5657150IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.4E-2961150IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-186184IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-1899111IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340100124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-18112124IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MDPSYRFIKE EFPRGFNDSP SPPSSSTSSY LHSTSMAPND PATLNSPQPI EGLHESGPPP  60
FLTKTYDLVE DSRTNHVVSW SQANNSFIVW DQEYFSMTLL PIFFKHNNLS SFVRQLNTYG  120
FRKVNPDRWE FANEGFLRGQ KHLLKTIRRR KTNNCCIEVG KYGLDGEMDS LRRDKQVLMM  180
ELVKVRQQQQ STKMDLTLLE DKLKKTESKQ KQMMSFLARA MQNPDFLQQL IEQKEKRKNT  240
EEAIDKKRQR PIDQGKRHVV CVEDYDDGGG GYGRYGKDAG SSSAFFDMKQ ETYGDMSELD  300
RLAMHIQGLG DQCNKEDVVL DVGKGNEEEQ HKERYQDENN EIYGEGFWED LLNEGQNFDL  360
QGDDEENVDV LIEQLGYLGS SGH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-245215217131Heat shock factor protein 1
5d5v_B1e-245215217131Heat shock factor protein 1
5d5v_D1e-245215217131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00085879001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893271e-139AC189327.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB037A01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013732918.10.0heat stress transcription factor A-6b-like
SwissprotQ9LUH80.0HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A078I9U80.0A0A078I9U8_BRANA; BnaCnng14280D protein
STRINGBra023800.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.10.0heat shock transcription factor A6B
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]