PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00085787001
Common NameGSBRNA2T00085787001, LOC106427467
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family RAV
Protein Properties Length: 340aa    MW: 39237.3 Da    PI: 8.8054
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00085787001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.81.9e-114795155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++ykGV +   +g W A+I+       ++r++lg+f +a eAa+a++ a  kl+g
  GSBRNA2T00085787001 47 TKYKGVVQQQ-NGHWGAQIYAE-----HRRIWLGTFKSAAEAAAAYDSASIKLRG 95
                         69****9888.8*********5.....5************************998 PP
2B391.94.9e-29170261183
                          EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                          f k+ltpsdv+k++rlv+pkk+a +h         +g+   +++++++d++ r+W+++++y+++s+++v+t+GW++Fvk+++Lke+D++v
  GSBRNA2T00085787001 170 FHKELTPSDVGKLNRLVIPKKYAVKHlpfisddqeEGEAVDDVEVVFYDSTMRQWKFRYCYWRSSQSFVFTRGWNGFVKEKNLKEKDVIV 259
                          89*****************************98887777799************************************************ PP

                          EE CS
                   B3  82 Fk 83 
                          F+
  GSBRNA2T00085787001 260 FY 261
                          *9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.31E-1347107No hitNo description
PfamPF008472.8E-64795IPR001471AP2/ERF domain
PROSITE profilePS5103217.66248105IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-1448107IPR016177DNA-binding domain
SMARTSM003806.8E-1948111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-1748105IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.4E-31164262IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-27168263IPR015300DNA-binding pseudobarrel domain
CDDcd100171.67E-24169261No hitNo description
SMARTSM010191.1E-19170275IPR003340B3 DNA binding domain
PfamPF023627.8E-26170262IPR003340B3 DNA binding domain
PROSITE profilePS5086312.421170273IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MVILHEISNE AKTTTETSGS SNSFLRLATK PTVSTTTRIA LSNTATTKYK GVVQQQNGHW  60
GAQIYAEHRR IWLGTFKSAA EAAAAYDSAS IKLRGFDANS HRNFPWSELT VHEPDFQILY  120
TTEAVLNMIR DGSYHHKFRD HVMSRSRMAN FNMVQSKQES NKCFSCTQLF HKELTPSDVG  180
KLNRLVIPKK YAVKHLPFIS DDQEEGEAVD DVEVVFYDST MRQWKFRYCY WRSSQSFVFT  240
RGWNGFVKEK NLKEKDVIVF YSCDVPSNVR RLEGQRDKFL MIDVDHKGFV APKEENKMVH  300
NRSEGEMKTE NFFNSKLEDE ETKQEEKKGG FMLFGVRIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-2616926013100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00085787001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022546561.10.0AP2/ERF and B3 domain-containing transcription factor At1g51120
SwissprotQ9C6881e-179RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A078IB770.0A0A078IB77_BRANA; BnaA08g02030D protein
STRINGBra014282.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-161RAV family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]