PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00085621001
Common NameGSBRNA2T00085621001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 732aa    MW: 81673.5 Da    PI: 6.7908
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00085621001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.1e-2075130156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          r++ +++tk+q++e+e++F+++++p+ ++r+eL+++lgL+  q+k+WFqN+R++ k
  GSBRNA2T00085621001  75 RKRYHRHTKHQIQEMENFFKECPHPDDTQRKELSRQLGLDHHQIKFWFQNKRTQIK 130
                          789999**********************************************9988 PP
2START160.11.7e-502584772206
                          HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
                START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                          lae a++el+++a ++ep+W   +      +n  e +++f  + +      ++ea++a+ + +m++ + v++l+d++  W++++a    +
  GSBRNA2T00085621001 258 LAELAMKELMAMARLDEPLWDIGAngtsLALNLNEHTRIFRNGLGpilngLRTEASKATSIAFMNHLDIVQSLMDVN-LWSNMFArmvaR 346
                          77889***************999987776678888888885555599999***************************.******999999 PP

                          EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS
                START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161
                          a+ +++i +g      ga +lm+ae+q+lsp+v+ R+ +fvRy++q+g+g w++vdvS+d+  ++ e     +++++pSg+li++ +ng 
  GSBRNA2T00085621001 347 AMSHDAILTGvqgnfdGAFHLMTAEYQVLSPVVStRECYFVRYCKQQGDGIWAVVDVSIDHLFPNLE----LKCRRRPSGCLIQQIENGF 432
                          ***************************************************************9997....99999************** PP

                          EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          +kvtwvehv++++r +h l++sl++sg+a  a +wv+tl+rqce+
  GSBRNA2T00085621001 433 CKVTWVEHVEVDDREVHPLYKSLISSGQALSAERWVETLERQCER 477
                          *******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.3E-2253130IPR009057Homeodomain-like
SuperFamilySSF466891.09E-1961133IPR009057Homeodomain-like
PROSITE profilePS5007116.68272132IPR001356Homeobox domain
SMARTSM003894.9E-1873136IPR001356Homeobox domain
PfamPF000461.5E-1775130IPR001356Homeobox domain
CDDcd000863.41E-1875133No hitNo description
PROSITE patternPS000270107130IPR017970Homeobox, conserved site
PROSITE profilePS5084838.08248480IPR002913START domain
SuperFamilySSF559611.92E-28250479No hitNo description
CDDcd088755.79E-101252476No hitNo description
SMARTSM002347.9E-39257477IPR002913START domain
PfamPF018521.3E-42258477IPR002913START domain
Gene3DG3DSA:3.30.530.201.6E-4365446IPR023393START-like domain
SuperFamilySSF559616.87E-12502693No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MSQPNMVPVE MNNNIGDGDN NNNNNNNNNG NNTTTTNNDI NGGIVLGDEE IDSANTSENQ  60
EDGSDHQDPA RPSKRKRYHR HTKHQIQEME NFFKECPHPD DTQRKELSRQ LGLDHHQIKF  120
WFQNKRTQIK NHQERHENSQ LRAENDRLRA ENHQCRASIA KAICHRCGGK TAIGEMSFEE  180
HHLLLENTKL AEEIRQLSLV MPKCTGKPVM NYTLTPPVPA RPSEEIASNR REVYGSIGNL  240
PGSALRVKDV DKPLIIELAE LAMKELMAMA RLDEPLWDIG ANGTSLALNL NEHTRIFRNG  300
LGPILNGLRT EASKATSIAF MNHLDIVQSL MDVNLWSNMF ARMVARAMSH DAILTGVQGN  360
FDGAFHLMTA EYQVLSPVVS TRECYFVRYC KQQGDGIWAV VDVSIDHLFP NLELKCRRRP  420
SGCLIQQIEN GFCKVTWVEH VEVDDREVHP LYKSLISSGQ ALSAERWVET LERQCERLAY  480
IMSPNVPSIE PDGLIMITNN AKQSLLKIAE RMTRSFLSGV ATSNGDIWFR LSGNGGNTVR  540
AMTRKSLNDP GRPVGVILYA STSFWLLVPP KTVFDFLRDA KNRTNWDVIT TGGEDLQLMS  600
QIGNGRDSRN CVSLLRTPNT SQKKMMMIQE TSTDPTASFV IYAPLDVTLT ENVLMGGDPG  660
NVSLLPMGFA ILPDGTAQPG REGGSLVSAA FQVLAEKDPS ARLSFSSLAT TENLILKTAH  720
KIRAYFSQQT V*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00085621001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634882.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A078FR310.0A0A078FR31_BRANA; BnaC04g42840D protein
STRINGBo4g177910.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.30.0homeodomain GLABROUS 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]