PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00085509001
Common NameGSBRNA2T00085509001, LOC106414939
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 184aa    MW: 20806.2 Da    PI: 5.3147
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00085509001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-192068355
                  AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         y+GVr++k +g+Wv+eIr+p   gk++r++lg++ tae+Aa+a++ a+ +l+g
  GSBRNA2T00085509001 20 YRGVRRRK-WGKWVSEIREP---GKKTRIWLGSYETAEMAAAAYDSAAIYLRG 68
                         9****998.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-131968IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-311977IPR001471AP2/ERF domain
PROSITE profilePS5103222.9981976IPR001471AP2/ERF domain
SMARTSM003806.1E-361982IPR001471AP2/ERF domain
CDDcd000184.10E-222078No hitNo description
PRINTSPR003672.7E-102031IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-222077IPR016177DNA-binding domain
PRINTSPR003672.7E-104258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MENNHVSQRE QRYSVDQVSY RGVRRRKWGK WVSEIREPGK KTRIWLGSYE TAEMAAAAYD  60
SAAIYLRGRG THLNFPEHAG SFPRPESFSS EHVQVAAREA ALMFKPGVPF TEHAIGSGQG  120
PSRVGLSPDQ IQAIIDFPMD SPRMGWMQDL EVNDYEELYG RCCGQCDGDE FSEIQPLQSI  180
WDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-162081668ATERF1
3gcc_A3e-162081668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00085509001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893410.0AC189341.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB041L12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013710975.11e-136ethylene-responsive transcription factor ERF022
SwissprotQ9LQ282e-87ERF22_ARATH; Ethylene-responsive transcription factor ERF022
TrEMBLA0A078FLG51e-135A0A078FLG5_BRANA; BnaC06g07710D protein
STRINGBo6g046850.11e-134(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.11e-88ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]