PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00085406001
Common NameGSBRNA2T00085406001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 297aa    MW: 33846.3 Da    PI: 4.8971
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00085406001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM117.21.6e-3651373128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          +Gf F+Ptdeelv +yL++k+ g++  ++e i+ev+i +++Pw+L+  +kvk+++  wyfFs+r +   +g+r+nr+t+sg+Wk tg   
  GSBRNA2T00085406001   5 VGFGFRPTDEELVGYYLHNKILGNDWLVQELINEVNISNFDPWNLRfqSKVKSRDLVWYFFSRRGS---NGDRQNRKTSSGFWKITGDPV 91 
                          7************************999899**************85347777888******9876...799****************** PP

                  NAM  91 evlsk......kgelvglkktLvfykg..rapkgektdWvmheyrl 128
                          ev+++       + ++g k++Lvf +g  ++++++k+dWvmhey+ 
  GSBRNA2T00085406001  92 EVKDQwgtwcgVKGKIGYKRVLVFRRGksSSSQSTKSDWVMHEYHY 137
                          ****99888876667**********882245566799*******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100541.4183155IPR003441NAC domain
SuperFamilySSF1019415.75E-405155IPR003441NAC domain
PfamPF023652.1E-235136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEDVVGFGFR PTDEELVGYY LHNKILGNDW LVQELINEVN ISNFDPWNLR FQSKVKSRDL  60
VWYFFSRRGS NGDRQNRKTS SGFWKITGDP VEVKDQWGTW CGVKGKIGYK RVLVFRRGKS  120
SSSQSTKSDW VMHEYHYTLL PQDQRTHVIC RLEYKGQDMS ILSANPTEPL PTFFPNVTNS  180
AASDSVVNQS VQGNSASFNT FSDYDSANQG QWFSEDFNLH QPVVSYDDGD TQRIWDYVVE  240
KNFSQYRPKK PVTVVSVDDS SDADNTDTES TTVCNVNSGF NGLESDQNCQ VMFAFV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-21615720166NO APICAL MERISTEM PROTEIN
1ut4_B4e-21615720166NO APICAL MERISTEM PROTEIN
1ut7_A4e-21615720166NO APICAL MERISTEM PROTEIN
1ut7_B4e-21615720166NO APICAL MERISTEM PROTEIN
3swm_A3e-21615723169NAC domain-containing protein 19
3swm_B3e-21615723169NAC domain-containing protein 19
3swm_C3e-21615723169NAC domain-containing protein 19
3swm_D3e-21615723169NAC domain-containing protein 19
3swp_A3e-21615723169NAC domain-containing protein 19
3swp_B3e-21615723169NAC domain-containing protein 19
3swp_C3e-21615723169NAC domain-containing protein 19
3swp_D3e-21615723169NAC domain-containing protein 19
4dul_A4e-21615720166NAC domain-containing protein 19
4dul_B4e-21615720166NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00085406001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013586612.10.0PREDICTED: NAC domain-containing protein 1-like
SwissprotQ0WV961e-96NAC1_ARATH; NAC domain-containing protein 1
TrEMBLA0A078FQS00.0A0A078FQS0_BRANA; BnaC05g00930D protein
STRINGBo5g002850.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76581640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01010.15e-91NAC domain containing protein 1
Publications ? help Back to Top
  1. Davuluri RV, et al.
    AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.
    BMC Bioinformatics, 2003. 4: p. 25
    [PMID:12820902]
  2. Palaniswamy SK, et al.
    AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks.
    Plant Physiol., 2006. 140(3): p. 818-29
    [PMID:16524982]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  5. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]