PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00085404001
Common NameGSBRNA2T00085404001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 426aa    MW: 47988.4 Da    PI: 4.7923
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00085404001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1102.8e-3451412128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                           pGf F+P deelv +yL++k  g++  ++  i+e++iy+v+Pw+L+  ++++e  +yfFs+rd+kya+g++++r+t sg+Wk tg+  +
  GSBRNA2T00085404001   5 KPGFGFRPYDEELVGYYLHHKNLGNDSLVDGLINEINIYSVDPWNLR--FQSREPVLYFFSRRDNKYANGNQQSRTTPSGFWKLTGNPVN 92 
                          59************************999889**************7..66788899********************************* PP

                  NAM  92 vlsk.......kgelvglkktLvfykgrap.....kgektdWvmheyrl 128
                          v+++       +ge +g k++L+f +g+++     + +k+dWvmhe + 
  GSBRNA2T00085404001  93 VIDRwgnvsgsRGEIIGHKRVLTFGRGKNNsvsevNKTKSDWVMHELHY 141
                          ***999998888888**********76554111115679*******875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100539.6544159IPR003441NAC domain
SuperFamilySSF1019414.05E-375159IPR003441NAC domain
PfamPF023656.1E-186140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MEGEKPGFGF RPYDEELVGY YLHHKNLGND SLVDGLINEI NIYSVDPWNL RFQSREPVLY  60
FFSRRDNKYA NGNQQSRTTP SGFWKLTGNP VNVIDRWGNV SGSRGEIIGH KRVLTFGRGK  120
NNSVSEVNKT KSDWVMHELH YTVLPEDKRT YVVCRLEYKG DDVNILSPKA TDFTPTFVPT  180
MANSASSVVD QSFQVNSEYD NPFPEYQDHL FSGIFDMFDT FQGYSDNLNP VLEYGLPNQS  240
NSSDSDTDSM IGTDAWSSTD SVGSKDGPYH TPKDNNPSMI TVEPLDNHEA QEQPKQLELQ  300
LQGKEKIGTN ASSSTDSVGS KDGPYHTPKD NTPSMITVEP LDNHETQEQP KQLELQLQGK  360
EKQSECVLKI AEDAIKKAPS TSAVKQNWIV LEEISQRNSR WIYLKNIIGL LLFIIFIIGW  420
IILVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-20615619162NO APICAL MERISTEM PROTEIN
1ut4_B4e-20615619162NO APICAL MERISTEM PROTEIN
1ut7_A4e-20615619162NO APICAL MERISTEM PROTEIN
1ut7_B4e-20615619162NO APICAL MERISTEM PROTEIN
3swm_A4e-20615622165NAC domain-containing protein 19
3swm_B4e-20615622165NAC domain-containing protein 19
3swm_C4e-20615622165NAC domain-containing protein 19
3swm_D4e-20615622165NAC domain-containing protein 19
3swp_A4e-20615622165NAC domain-containing protein 19
3swp_B4e-20615622165NAC domain-containing protein 19
3swp_C4e-20615622165NAC domain-containing protein 19
3swp_D4e-20615622165NAC domain-containing protein 19
4dul_A4e-20615619162NAC domain-containing protein 19
4dul_B4e-20615619162NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00085404001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437290.11e-149PREDICTED: NAC domain-containing protein 1-like
SwissprotQ0WV961e-98NAC1_ARATH; NAC domain-containing protein 1
TrEMBLA0A078FQS30.0A0A078FQS3_BRANA; BnaC05g00910D protein
STRINGBo5g002830.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76581640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01010.14e-86NAC domain containing protein 1
Publications ? help Back to Top
  1. Davuluri RV, et al.
    AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.
    BMC Bioinformatics, 2003. 4: p. 25
    [PMID:12820902]
  2. Palaniswamy SK, et al.
    AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks.
    Plant Physiol., 2006. 140(3): p. 818-29
    [PMID:16524982]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  5. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]