PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00085396001
Common NameGSBRNA2T00085396001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 323aa    MW: 36799.7 Da    PI: 9.7589
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00085396001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B397.39.6e-3152151193
                          EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-. CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld. 85 
                          f+kv tpsdv+k++rlv+pk++ae++    + ++++++ l ++d++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  
  GSBRNA2T00085396001  52 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSTNNQNGTLLNFQDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGi 141
                          89***************************955566889*************************************************543 PP

                          SS..SEE..E CS
                   B3  86 gr..sefelv 93 
                          g+  ++ +l+
  GSBRNA2T00085396001 142 GDesQRSKLY 151
                          5522344444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.7E-4245159IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-2948140IPR015300DNA-binding pseudobarrel domain
CDDcd100177.49E-2650146No hitNo description
SMARTSM010196.9E-2252158IPR003340B3 DNA binding domain
PROSITE profilePS5086314.62152158IPR003340B3 DNA binding domain
PfamPF023624.8E-2852154IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDLSLAPTSS DQEQDKDQEL ASNIGASSSS GTANNTNFPM MMIPPPEKEH MFDKVVTPSD  60
VGKLNRLVIP KQHAERYFPL DSTNNQNGTL LNFQDRNGKM WRFRYSYWNS SQSYVMTKGW  120
SRFVKEKKLD AGDIVSFQRG IGDESQRSKL YIDWRHRPDM SLVQAHQFGN YGFNFNFPTT  180
SQYSNRFHPL PEYSSVPIQR SLNIGNHQRS YYNNQRQEFV GYGYGNLAYY TGSPLDQRSI  240
VGPEPLVIES IPVVPGRLPP VMMLPPPLPP PPSTAGKRLR LFGKWVLLLR QLSDSIYRMI  300
MMMADDQFAK KGKSSFSLDF SP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-63461582114B3 domain-containing transcription factor NGA1
5os9_B2e-63461582114B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00085396001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0073230.0AC007323.5 Genomic sequence for Arabidopsis thaliana BAC T25K16 from chromosome I, complete sequence.
GenBankAF1965660.0AF196566.1 Arabidopsis thaliana chromosome I, partial sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankFJ8737330.0FJ873733.1 Arabidopsis thaliana ecotype Landsberg erecta NGATHA3 (NGA3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013696948.10.0B3 domain-containing transcription factor NGA3-like
SwissprotQ9MAN11e-168NGA3_ARATH; B3 domain-containing transcription factor NGA3
TrEMBLA0A078FSD60.0A0A078FSD6_BRANA; BnaC05g00870D protein
STRINGBo5g002790.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139901724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.11e-156B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]