PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00085330001

Common Name

GSBRNA2T00085330001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 287aa MW: 32378.9 Da PI: 7.9259

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00085330001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.7	7.8e-52	6	130	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeelv++yL++k++++++ + +i+e+d+yk++Pw+Lp + +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg dk GSBRNA2T00085330001 6 LPPGFRFHPTDEELVMHYLCRKCASQSIAV-PIIAEIDLYKYNPWELPGLALYGEKEWYFFSPRDRKYPNGSRPNRSAGSGYWKATGADK 94 79***********************999.88***********6555679******************************* PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + vg+kk Lvfy g+apkgekt+W+mheyrl GSBRNA2T00085330001 95 PIGL--PKPVGIKKALVFYAGKAPKGEKTNWIMHEYRL 130 99..789***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.12E-61	3	158	IPR003441	NAC domain
PROSITE profile	PS51005	59.999	6	158	IPR003441	NAC domain
Pfam	PF02365	1.7E-27	7	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009611	Biological Process	response to wounding
GO:0009788	Biological Process	negative regulation of abscisic acid-activated signaling pathway
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MSELQLPPGF RFHPTDEELV MHYLCRKCAS QSIAVPIIAE IDLYKYNPWE LPGLALYGEK 60 EWYFFSPRDR KYPNGSRPNR SAGSGYWKAT GADKPIGLPK PVGIKKALVF YAGKAPKGEK 120 TNWIMHEYRL ADVDRSAARK KKNSLRLDDW VLCRIYNKKG AIEKRGPPPT PVVYGDEVVE 180 EKPRLSEMGM PPPPVMPNDF VYFDTSDSVP KLHTTESSCS EQVVSPEFTS EVQSEPKWKD 240 WSGAANDKNS LDFGFNYIDA TAFGGGGSNQ LFPLQDMFMY NMPKPY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-81	2	164	11	174	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.2302	0.0	flower\| leaf\| microspore-derived embryo\| seed

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00121	DAP	Transfer from AT1G01720	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00085330001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY245884	0.0	AY245884.1 Brassica napus NAC-domain protein 5-11 (NAC5-11) mRNA, complete cds.
GenBank	KC966748	0.0	KC966748.1 Brassica napus NAC transcription factor 2 (NAC2.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013585836.1	0.0	PREDICTED: NAC domain-containing protein 2
Swissprot	Q39013	0.0	NAC2_ARATH; NAC domain-containing protein 2
TrEMBL	A0A078FSA1	0.0	A0A078FSA1_BRANA; BnaC05g00370D protein
TrEMBL	A0A0D3C6U0	0.0	A0A0D3C6U0_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6EAH3	0.0	A0A3P6EAH3_BRAOL; Uncharacterized protein
STRING	Bo5g001100.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM190	28	276

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	0.0	NAC family protein

Publications ? help Back to Top
Florentin A,Damri M,Grafi G Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization. Dev. Dyn., 2013. 242(10): p. 1121-33 [PMID:23798027] Jensen MK, et al. ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana. FEBS Open Bio, 2013. 3: p. 321-7 [PMID:23951554] Wang YX Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress. Mol. Biol. Rep., 2013. 40(11): p. 6451-8 [PMID:24057250] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Yang X, et al. Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis. Plant Cell Rep., 2015. 34(6): p. 943-58 [PMID:25666276] Du Q,Wang H The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation. Plant Signal Behav, 2015. 10(10): p. e1078955 [PMID:26340415] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Liu Y,Sun J,Wu Y Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice. J. Plant Res., 2016. 129(5): p. 955-962 [PMID:27216423] Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining. PLoS ONE, 2016. 11(9): p. e0162327 [PMID:27618630] Zhao J,Missihoun TD,Bartels D The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana. Planta, 2018. 248(4): p. 1017-1027 [PMID:30027414]