PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00084741001 | ||||||||
Common Name | GSBRNA2T00084741001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 168aa MW: 19007 Da PI: 9.9973 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33 | 1.1e-10 | 51 | 146 | 5 | 80 |
-..-HHHHT.T-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE......EEETTE....EEE-TTHHHHHH CS B3 5 ltpsdvlks.grlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliy....rkksgr....yvltkGWkeFvk 70 lt+ dv k + l++p + + +h +g+ke++ t+ + d++ ++We+k++ + y+l+ W++ vk GSBRNA2T00084741001 51 LTTTDVDKGqSHLSIPMSSLVTHsfmtsdekekienrvKGDKEGGLTVEVIDPKLKVWELKMRRshetG----KtsslYYLAYQWNHVVK 136 5666666655569******99999***9999999999988999*******************7666533....13347************ PP HHT--TT-EE CS B3 71 angLkegDfv 80 an+ k+gD + GSBRNA2T00084741001 137 ANKFKQGDEL 146 *******965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03754 | 1.6E-22 | 31 | 136 | IPR005508 | B3 domain-containing protein |
Gene3D | G3DSA:2.40.330.10 | 1.1E-13 | 41 | 161 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-13 | 43 | 161 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.80E-7 | 48 | 159 | No hit | No description |
PROSITE profile | PS50863 | 9.22 | 67 | 165 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MANGDVGVEE KLMPLKKRRS LRVVVELTGK LKETITKMGG TEETLITKRT LTTTDVDKGQ 60 SHLSIPMSSL VTHSFMTSDE KEKIENRVKG DKEGGLTVEV IDPKLKVWEL KMRRSHETGK 120 TSSLYYLAYQ WNHVVKANKF KQGDELQLWS FRSQQKLCLA LVLLQGE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00084741001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013690191.1 | 1e-118 | B3 domain-containing protein At3g25182-like | ||||
Refseq | XP_022569069.1 | 1e-118 | B3 domain-containing protein At3g25182-like | ||||
TrEMBL | A0A078FPM4 | 1e-117 | A0A078FPM4_BRANA; BnaC04g48510D protein | ||||
STRING | XP_006411545.1 | 8e-54 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2001 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05930.1 | 1e-13 | B3 family protein |
Publications ? help Back to Top | |||
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