PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00084711001

Common Name

GSBRNA2T00084711001, LOC106394667, LOC106450324

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

LBD

Protein Properties

Length: 200aa MW: 22561.2 Da PI: 6.5725

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00084711001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	122.1	2.9e-38	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrrkC +Cv+apyf+++q +++fa++h++FGasn +kll++lp e+r +a+ +++yeA+ar++dP+yG+v++i++lqqq+ + GSBRNA2T00084711001 7 PCGACKFLRRKCIYGCVFAPYFCHDQgASHFAAIHQVFGASNASKLLSKLPMEDRCEAAITIYYEAQARLQDPIYGCVAHIFSLQQQVVN 96 7***********************89********************************************************** PP DUF260 90 lkaelallkee 100 l+a+l+ lk++ GSBRNA2T00084711001 97 LQAQLEILKQQ 107 *****9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.677	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.6E-36	7	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MTGSGSPCGA CKFLRRKCIY GCVFAPYFCH DQGASHFAAI HQVFGASNAS KLLSKLPMED 60 RCEAAITIYY EAQARLQDPI YGCVAHIFSL QQQVVNLQAQ LEILKQQATE SMMTTDTPSL 120 ENPNYYRDTK LQQLQQSLDL HRHHNRHHQD RSLDTESDSD LRNIMTSYSE LDQHLNTFNQ 180 YHNGGNDVLS ASFGYISYS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-34	3	102	7	105	LOB family transfactor Ramosa2.1
5ly0_B	1e-34	3	102	7	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00084711001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:15659631}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473848	1e-138	AB473848.1 Arabidopsis thaliana ASL15 mRNA for ASYMMETRIC LEAVES2-like 15 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013690686.1	1e-149	LOB domain-containing protein 17-like
Refseq	XP_013747423.1	1e-149	LOB domain-containing protein 17-like
Swissprot	Q9SLB6	6e-99	LBD17_ARATH; LOB domain-containing protein 17
TrEMBL	A0A078FPN0	1e-148	A0A078FPN0_BRANA; BnaC04g48290D protein
STRING	Bo4g191540.1	1e-148	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42440.1	3e-91	LBD family protein

Link Out ? help Back to Top
Entrez Gene	106394667 \| 106450324

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]