PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00084516001
Common NameGSBRNA2T00084516001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 692aa    MW: 76164.9 Da    PI: 5.3342
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00084516001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.22.1e-1666119356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          k++++t+ ql  Lee Fe+++ +  +++  LA+klgL+ +qV vWFqNrRa+ k
  GSBRNA2T00084516001  66 KKRKLTPIQLCLLEESFEEDKRLEPDRKLWLAEKLGLQPTQVAVWFQNRRARFK 119
                          56799***********************************************98 PP
2HD-ZIP_I/II108.93.6e-3566156292
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          kkr+l+  q+ lLEesFee+++Lep+rK  la++Lglqp qvavWFqnrRAR+kt+qlE d+++Lk++y +lk++++ L +++++L++++
  GSBRNA2T00084516001  66 KKRKLTPIQLCLLEESFEEDKRLEPDRKLWLAEKLGLQPTQVAVWFQNRRARFKTRQLELDCDSLKASYAKLKTDRDILVRQNQALENKV 155
                          9*************************************************************************************9987 PP

          HD-ZIP_I/II  92 k 92 
                          +
  GSBRNA2T00084516001 156 A 156
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.28E-1749123IPR009057Homeodomain-like
PROSITE profilePS5007116.29361121IPR001356Homeobox domain
SMARTSM003893.5E-1764125IPR001356Homeobox domain
CDDcd000861.76E-1666122No hitNo description
PfamPF000469.4E-1466119IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.4E-1768124IPR009057Homeodomain-like
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
PfamPF021832.1E-11122162IPR003106Leucine zipper, homeobox-associated
Gene3DG3DSA:2.130.10.301.5E-94318682IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
SuperFamilySSF509855.67E-89318682IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
PROSITE profilePS5001214.604321372IPR000408Regulator of chromosome condensation, RCC1
PfamPF004151.8E-8322369IPR000408Regulator of chromosome condensation, RCC1
PRINTSPR006331.4E-14322338IPR000408Regulator of chromosome condensation, RCC1
PRINTSPR006331.4E-14356369IPR000408Regulator of chromosome condensation, RCC1
PfamPF004151.3E-11373420IPR000408Regulator of chromosome condensation, RCC1
PROSITE profilePS5001214.584373424IPR000408Regulator of chromosome condensation, RCC1
PRINTSPR006331.4E-14375391IPR000408Regulator of chromosome condensation, RCC1
PfamPF004154.6E-11424473IPR000408Regulator of chromosome condensation, RCC1
PROSITE profilePS5001213.599425476IPR000408Regulator of chromosome condensation, RCC1
PROSITE patternPS006260463473IPR000408Regulator of chromosome condensation, RCC1
PRINTSPR006331.4E-14463479IPR000408Regulator of chromosome condensation, RCC1
PROSITE profilePS5001213.479477531IPR000408Regulator of chromosome condensation, RCC1
PfamPF004157.1E-7478528IPR000408Regulator of chromosome condensation, RCC1
PROSITE profilePS500129.097532575IPR000408Regulator of chromosome condensation, RCC1
PRINTSPR006331.4E-14565583IPR000408Regulator of chromosome condensation, RCC1
PROSITE profilePS500128.615576630IPR000408Regulator of chromosome condensation, RCC1
PfamPF135401.7E-7616643No hitNo description
PROSITE patternPS006260617627IPR000408Regulator of chromosome condensation, RCC1
PRINTSPR006331.4E-14626647IPR000408Regulator of chromosome condensation, RCC1
PROSITE profilePS500129.378631685IPR000408Regulator of chromosome condensation, RCC1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MENSNIDSEV WFQNQNQNHC LKFHSSCFPP TSQSALYGSS SMSNTEINTV DEDDVCESYK  60
MRETTKKRKL TPIQLCLLEE SFEEDKRLEP DRKLWLAEKL GLQPTQVAVW FQNRRARFKT  120
RQLELDCDSL KASYAKLKTD RDILVRQNQA LENKVALLKE ELKIQEKLET QSMEAEKLGE  180
EGSSMKSDNT QYTEEEEEEE EEGLGSNQYS FPELAALGFY YDPTLSASNL GLVHIEAKKT  240
LNIFMVGNKN LINKILIFLQ VKRTLCYSHG VKVLRPFIEL DRQYHIFQWL ENPKVTVLSI  300
RDGRVMAEHG GITPAPADEE EQVWSWGAGT DGQLGTAKLQ DEHLPQLLWL TSLASISMLA  360
CGGAHVIALT SGGKVLTWGR GNSGQLGHGD MLDSSLPKPV SFFDDYVVTQ ASAGWSHSGF  420
VSDSGCLFTC GNGSFGQLGH GDNMSLCSPA KVSYFADKSV KMVACGMRHS LVLFAGNQVC  480
GFGSGKRGQL GFSSDKTKTL INLPCLVSGL EDVEIVRIAA NGDHSAAITA NGQMFSWGRG  540
FCGSPDVQAP QCLPSSQFFR EVALGWSHAL LLTVDGEVFK LGNTLNKQSE KQQLQVDPSE  600
PFLEKVPGFD GVKVMQIAAG AEHSAALTEN GEVQTCGWGE HGQLGVGNTN DQNNPQLVSL  660
GSIDQRTRDT KVYCGSGFTY VVRRIQKLSS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dnu_A8e-422916826371AT5g63860/MGI19_6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00084516001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013698008.10.0ultraviolet-B receptor UVR8-like
RefseqXP_022569314.10.0ultraviolet-B receptor UVR8-like
TrEMBLA0A078FP780.0A0A078FP78_BRANA; BnaC05g19660D protein
STRINGBra024664.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1020022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27045.11e-112HD-ZIP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]