PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00084442001 | ||||||||
Common Name | GSBRNA2T00084442001, GSBRNA2T00111892001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NF-YA | ||||||||
Protein Properties | Length: 282aa MW: 30995 Da PI: 10.2491 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 90.8 | 1.8e-28 | 136 | 195 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRaklee...ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +++VN+KQy++I++RRq+Rak+++ ++k ++k rkpy+h+SRh hAlrRpRgsgGrF GSBRNA2T00084442001 136 GTIFVNSKQYHAIIRRRQSRAKAAAvldQNKPSSKFRKPYMHHSRHLHALRRPRGSGGRF 195 689*********************9999*******************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.8E-28 | 133 | 198 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 33.984 | 134 | 198 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.3E-20 | 137 | 159 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.3E-22 | 137 | 195 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.3E-20 | 172 | 195 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MAMQTMREGL PSAPQISWWN AFGSQPLTPE SLSGDNDSLA GVKVRSAGGI EQGVNKQSNS 60 VSHFAFSLGD VKSPRVVPKP HGSAFSMQPP YLELGFSQPQ MYKKYPCVEQ QYYGVLSPYG 120 SHSSVMLPLN METEDGTIFV NSKQYHAIIR RRQSRAKAAA VLDQNKPSSK FRKPYMHHSR 180 HLHALRRPRG SGGRFLNTKS QNNAKKADGT KQTQPQQSNS QDSDVLHPEN VTMNLSNRLG 240 SEVTSMNYFL SSSVHPLGGM VMPSKWITAA AMDNGCCSFK T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 2e-14 | 138 | 198 | 5 | 62 | HAPB protein |
4g92_A | 2e-14 | 138 | 198 | 5 | 62 | HAPB protein |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00084442001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013625432.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-2-like isoform X1 | ||||
Refseq | XP_013625433.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-2-like isoform X1 | ||||
Refseq | XP_013684485.1 | 0.0 | nuclear transcription factor Y subunit A-2-like | ||||
Swissprot | Q9M9X4 | 1e-161 | NFYA2_ARATH; Nuclear transcription factor Y subunit A-2 | ||||
TrEMBL | A0A078FP68 | 0.0 | A0A078FP68_BRANA; BnaC05g19190D protein | ||||
STRING | Bo3g060160.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3008 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05690.1 | 1e-163 | nuclear factor Y, subunit A2 |
Publications ? help Back to Top | |||
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