PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00084311001

Common Name

GSBRNA2T00084311001, LOC106381434

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

BES1

Protein Properties

Length: 294aa MW: 31428 Da PI: 8.4802

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00084311001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	179.6	1.4e-55	2	130	1	123
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssas.. 87 ++++r+ptw+ErEnnkrRERrRRaiaaki++GLR++Gny+lpk++DnneVlkALc+eAGw+ve+DGttyrkgs+++ e++e++gs s GSBRNA2T00084311001 2 TSGTRMPTWRERENNKRRERRRRAIAAKIFTGLRMYGNYELPKHCDNNEVLKALCNEAGWIVEPDGTTYRKGSSRPvERMEIGGSPCSsn 91 5899*******************************************************************9999**999765523 PP DUF822 88 .aspesslqsslkssalaspvesys..aspksssfpsps 123 +sp ss+ +l+ +s ++ + ++++sss s+s GSBRNA2T00084311001 92 fMSPASSSFANLTPGDGQSLIPWLKhlSTTSSSSASSSS 130 467777766555555555555444300333333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.9E-49	3	130	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MTSGTRMPTW RERENNKRRE RRRRAIAAKI FTGLRMYGNY ELPKHCDNNE VLKALCNEAG 60 WIVEPDGTTY RKGSSRPVER MEIGGSPCSS NFMSPASSSF ANLTPGDGQS LIPWLKHLST 120 TSSSSASSSS RLPNYLYIPG GSISAPVTPP LSSPTSRGMN QQINNSFFVS STPPSPTRQQ 180 TIPDCEWFSG IQLAQSVPAS PTFSLVSQNP FGFKEAGGGG GGSRMWTPGQ SGTCSPAIPQ 240 TADVPMSEAV VAPPEFAFGS SANGLVKAWE GERIHEVSGS DDLELTLGNS STR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	1e-21	6	73	372	439	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	1e-21	6	73	372	439	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	1e-21	6	73	372	439	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	1e-21	6	73	372	439	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.22597	0.0	root\| seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00084311001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY050430	1e-125	AY050430.1 Arabidopsis thaliana At1g78700/F9K20_26 mRNA, complete cds.
GenBank	AY090331	1e-125	AY090331.1 Arabidopsis thaliana At1g78700/F9K20_26 mRNA, complete cds.
GenBank	CP002684	1e-125	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	F9K20	1e-125	AC005679.1 Arabidopsis thaliana chromosome 1 BAC F9K20 sequence, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013615912.1	0.0	PREDICTED: BES1/BZR1 homolog protein 4
Refseq	XP_013676783.1	0.0	BES1/BZR1 homolog protein 4
Swissprot	Q9ZV88	1e-155	BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBL	A0A078FQK0	0.0	A0A078FQK0_BRANA; BnaC02g25200D protein
TrEMBL	A0A0D3ARI8	0.0	A0A0D3ARI8_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6D902	0.0	A0A3P6D902_BRAOL; Uncharacterized protein
STRING	Bo2g094650.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1917	27	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	1e-135	BES1/BZR1 homolog 4

Link Out ? help Back to Top
Entrez Gene	106381434

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]