PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00083984001
Common NameGSBRNA2T00083984001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 413aa    MW: 46837.3 Da    PI: 6.6529
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00083984001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.83.7e-52161421128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          l pGfrFhPtdeelv++yLk+k+++++l++ e i+++diy+++PwdLp k++++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d+
  GSBRNA2T00083984001  16 LLPGFRFHPTDEELVSFYLKRKIQHNPLSI-ELIRQLDIYTYDPWDLP-KFATGEKEWYFYCPRDRKYRNSSRPNRVTGAGFWKATGTDR 103
                          579***************************.89***************.777899*********************************** PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++s+ +++ +glkk+Lvfykgra kg+ktdW+mhe+r+
  GSBRNA2T00083984001 104 PIYSSeGNKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRM 142
                          ****956667***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.19E-5712174IPR003441NAC domain
PROSITE profilePS5100557.11816174IPR003441NAC domain
PfamPF023652.1E-2518142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MEERNNDGDH KMEEVLLPGF RFHPTDEELV SFYLKRKIQH NPLSIELIRQ LDIYTYDPWD  60
LPKFATGEKE WYFYCPRDRK YRNSSRPNRV TGAGFWKATG TDRPIYSSEG NKCIGLKKSL  120
VFYKGRAAKG VKTDWMMHEF RMPSLSEPSP SSKRFFDSPV SPNDSWAICR IFKKTNTTTL  180
RAMPHSFVSS LPSETSIDTM SLSNTSHFSS EKILKTSSHF QVHHENMSST TKPSSSPTSH  240
VATINPFSYL DFTSYEKTTN VFNPVSSLDQ QYLTNLFLAT QETQPQFPRL ASSNEFPSFL  300
LNTSSSDSAF LGECTSQIDL SVMLAQEQCP ALVSLPQEYQ EKGNGEIKSM GGCNEDHHNH  360
CGTLMFGDTG PTVEENHRHH YQDMKHNMTL LESYYSSLSS SNGDLPVCFS TT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-531617817169NO APICAL MERISTEM PROTEIN
1ut4_B2e-531617817169NO APICAL MERISTEM PROTEIN
1ut7_A2e-531617817169NO APICAL MERISTEM PROTEIN
1ut7_B2e-531617817169NO APICAL MERISTEM PROTEIN
3swm_A3e-531617820172NAC domain-containing protein 19
3swm_B3e-531617820172NAC domain-containing protein 19
3swm_C3e-531617820172NAC domain-containing protein 19
3swm_D3e-531617820172NAC domain-containing protein 19
3swp_A3e-531617820172NAC domain-containing protein 19
3swp_B3e-531617820172NAC domain-containing protein 19
3swp_C3e-531617820172NAC domain-containing protein 19
3swp_D3e-531617820172NAC domain-containing protein 19
4dul_A2e-531617817169NAC domain-containing protein 19
4dul_B2e-531617817169NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269|PubMed:19081078}.
UniprotTISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269|PubMed:19081078}.
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00083984001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893850.0AC189385.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB052E19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110048.10.0PREDICTED: protein FEZ-like
SwissprotQ9ZVH00.0FEZ_ARATH; Protein FEZ
TrEMBLA0A078IAZ70.0A0A078IAZ7_BRANA; BnaA08g19970D protein
STRINGBra016294.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.10.0NAC family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]