PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00083899001 | ||||||||
Common Name | GSBRNA2T00083899001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB_related | ||||||||
Protein Properties | Length: 189aa MW: 21724.3 Da PI: 6.9347 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59 | 1.1e-18 | 13 | 58 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+ l +++++++G++ W++Iar+++ gRt++++k++w++++ GSBRNA2T00083899001 13 RGKMTPEEERLVLELHAKWGNR-WSKIARKLP-GRTDNEIKNYWRTHM 58 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-4 | 1 | 19 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.85E-19 | 2 | 62 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.675 | 8 | 62 | IPR017930 | Myb domain |
SMART | SM00717 | 6.5E-18 | 12 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-17 | 13 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.74E-13 | 15 | 58 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-21 | 20 | 59 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
LRWVNYLHPG LKRGKMTPEE ERLVLELHAK WGNRWSKIAR KLPGRTDNEI KNYWRTHMRK 60 IAQEKKRPMS PTSSSSNFCS SSMTTATTQD TGRSEGKMNQ ECEDGYYSMD DIWREIDQSG 120 ESITKPVKGM YYSEQSCYLN FPPLASPAWE SSLESIWNMD ADESKMSSFA IDQFPLSFEH 180 GSSWSSLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-14 | 2 | 60 | 45 | 103 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 4e-14 | 2 | 60 | 99 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 4e-14 | 2 | 60 | 99 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 3e-14 | 2 | 60 | 68 | 126 | MYB TRANSFORMING PROTEIN |
1mse_C | 1e-14 | 2 | 60 | 45 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 1e-14 | 2 | 60 | 45 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB59-1 and isoform MYB59-2 are present in roots, leaves, and seedlings, while the expression of isoform MYB59-3 and isoform MYB59-4 is confined to seedlings. {ECO:0000269|PubMed:16531467}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00083899001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229048 | 0.0 | AK229048.1 Arabidopsis thaliana mRNA for MYB27 protein - like, complete cds, clone: RAFL16-34-F17. | |||
GenBank | AY519641 | 0.0 | AY519641.1 Arabidopsis thaliana MYB transcription factor (At5g59780) mRNA, complete cds. | |||
GenBank | DQ075252 | 0.0 | DQ075252.1 Arabidopsis thaliana MYB transcription factor MYB59-1 (At5g59780) mRNA, complete cds, alternatively spliced. | |||
GenBank | DQ075253 | 0.0 | DQ075253.1 Arabidopsis thaliana MYB transcription factor MYB59-2 (At5g59780) mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013618692.1 | 1e-137 | PREDICTED: transcription factor MYB59 isoform X1 | ||||
Refseq | XP_013618693.1 | 1e-137 | PREDICTED: transcription factor MYB59 isoform X2 | ||||
Swissprot | Q4JL84 | 1e-113 | MYB59_ARATH; Transcription factor MYB59 | ||||
TrEMBL | A0A078JQV8 | 1e-138 | A0A078JQV8_BRANA; BnaCnng62330D protein (Fragment) | ||||
STRING | Bo2g025410.1 | 1e-136 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2502 | 27 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.2 | 1e-112 | myb domain protein 59 |
Publications ? help Back to Top | |||
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