PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00083471001 | ||||||||
Common Name | GSBRNA2T00083471001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TALE | ||||||||
Protein Properties | Length: 575aa MW: 61932.6 Da PI: 7.3014 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28 | 3.6e-09 | 370 | 402 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++yp+ +++ LAk++gL+ +qV++WF N R + GSBRNA2T00083471001 370 HPYPTDTDKLMLAKQTGLSRNQVSNWFINARVR 402 89*****************************87 PP | |||||||
2 | BELL | 108.4 | 4.5e-35 | 225 | 293 | 4 | 72 |
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+ kkk+kL+s+l+eV+krYkqy+eqlq+v++sFe+vaglg+a+pY+sl lk +S+hF+cLk+ai++q+ GSBRNA2T00083471001 225 ENGKKKSKLISMLDEVYKRYKQYYEQLQAVMGSFECVAGLGHAAPYASLTLKVLSKHFKCLKNAITDQL 293 899***************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.6E-62 | 162 | 291 | IPR006563 | POX domain |
Pfam | PF07526 | 1.3E-34 | 167 | 290 | IPR006563 | POX domain |
SMART | SM00389 | 4.0E-9 | 346 | 410 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.01E-11 | 346 | 407 | No hit | No description |
SuperFamily | SSF46689 | 8.13E-17 | 348 | 413 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.1E-27 | 350 | 410 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.8E-18 | 363 | 402 | IPR008422 | Homeobox KN domain |
PROSITE profile | PS50071 | 11.645 | 365 | 406 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 575 aa Download sequence Send to blast |
MSDAYEPYHV LQHSRRDKLR MPSLDSHFHF HHPPPPPSSS GGGGVFPIAD SDFLAAGGFH 60 SNNNNNPSYS NFMGFLGGQS SSSSTAVAVA GDHSFNAGLS SGDVLVFKPE PLSLSLSSHP 120 RPTYDLVVPG VVNSGFCRSA AEAAAAAVTV ASRSSGPLGP FTGYASILKG SKFLKPAQML 180 LDDFCSVSRA VYTEQIVEDE DDDSSLLFDP TIDNLCGVSD AGVGENGKKK SKLISMLDEV 240 YKRYKQYYEQ LQAVMGSFEC VAGLGHAAPY ASLTLKVLSK HFKCLKNAIT DQLQFSTNNK 300 IQQQRGHVMN SENKTDFLVF GGSDNSRGLC STGQRHGFPD HHAPVWRPHR GLPERAVTVL 360 RAWLFDHFLH PYPTDTDKLM LAKQTGLSRN QVSNWFINAR VRVWKPMVEE IHMLETRQSQ 420 KSSSSWRDTT TVFPDNNNNP SSSTAQQRAN NNSSPARRVR NDDVHANTNN NNNHFMNAGN 480 GGNIGGGGGV SFSYGIASSN VPGMNTSTNG GVSLTLGLHH QIGLPEPFPM TTAQSFGLDG 540 GSSGGGAGGE SYDRPFGRDF IGGSNHQFLH DFVG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5bng_A | 1e-16 | 352 | 410 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 1e-16 | 352 | 410 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during late heart stage embryo in the SAM region between the two developing cotyledons. Expression is initially down-regulated in incipient floral primordia but a strong expression is subsequently detected in the central region of young floral primordia and the inner whorl of developing flowers. In fruit, is expressed in the replum of developing ovaries. {ECO:0000269|PubMed:12874117}. | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in stems, inflorescences and flowers. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00083471001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009125437.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 9 | ||||
Refseq | XP_013720155.1 | 0.0 | BEL1-like homeodomain protein 9 | ||||
Swissprot | Q9LZM8 | 0.0 | BLH9_ARATH; BEL1-like homeodomain protein 9 | ||||
TrEMBL | A0A078JUF6 | 0.0 | A0A078JUF6_BRANA; BnaAnng29380D protein | ||||
STRING | Bra028883.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5688 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02030.1 | 0.0 | TALE family protein |