PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00083360001
Common NameGSBRNA2T00083360001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HB-PHD
Protein Properties Length: 745aa    MW: 83529.6 Da    PI: 4.5638
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00083360001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox44.33.1e-14591636853
                          -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
             Homeobox   8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                          t+  +++L e F++nryp+ ++re LAk+l++t +qV +WF N R 
  GSBRNA2T00083360001 591 TNPKTQRLFESFQENRYPDISTRENLAKELQMTVKQVNNWFRNTRF 636
                          6678999************************************995 PP
2PHD39.99.4e-14251305150
                          SBTTTSSTCT..TSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
                  PHD   1 rCkvCgksde..egelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50 
                          +C+ Cg++d   ++++vlCdg C++ fH++C++++l++e++p +  +wlC+ C +
  GSBRNA2T00083360001 251 FCSKCGSKDVriDNDIVLCDGfCDRGFHQYCVQPPLRKEDIPPDdeSWLCPGCAC 305
                          69*****44346********88*******************99999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.77E-14241306IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.5E-13247305IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.083249306IPR019787Zinc finger, PHD-finger
CDDcd155042.63E-26251303No hitNo description
PfamPF006284.5E-11251305IPR019787Zinc finger, PHD-finger
SMARTSM002493.8E-10251304IPR001965Zinc finger, PHD-type
PROSITE patternPS013590252303IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5007112.746581641IPR001356Homeobox domain
SMARTSM003894.1E-10583645IPR001356Homeobox domain
SuperFamilySSF466898.13E-14589638IPR009057Homeodomain-like
PfamPF000469.4E-12591636IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-13592643IPR009057Homeodomain-like
CDDcd000862.16E-11595635No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MDRANRRRTR SSGSGLDQTN GGEVTPTPNK VPEAESHMKH LEESAKDVNG NGQGMIANGV  60
SGEEEQESRT PVTVKKSSGT KFTGSHRELV LGLPCRGQFE IKRSSKRLGG SGKKNLLASS  120
HKRAQRSKEA ASVLANPTPV NESKKRKNCI NKVEVREDDE YTRIKKKLRY FLNRISYEQS  180
LIDAYSLEGW KGSSAEKLRP EKELERAKKE ILRRKVKIRE LIQNLDTLCA EGNIPESLFN  240
SHGEISSEDI FCSKCGSKDV RIDNDIVLCD GFCDRGFHQY CVQPPLRKED IPPDDESWLC  300
PGCACKDYSF ELLNDSLGTK LSVSDSWEKV FPEAAAAMAG GGGQNLDCDL PSDDSEDEEY  360
DPDGLNDNEG DEDGSDDDSD ESENEDGSSD ESASEEMIGS FKDANDIMNL PSDDSEDDDY  420
DPDAPARDED KMQESSNSDD SDSEDGETSS KGDESDQQDE VTPRGKPGRK KSKLPDVSIS  480
ESDAGIGEDV PGRRKVERLD YKKLYDEEYE NVPTSSSDDE DWDKIAGKED FESGDEGDTV  540
PLEQPSKAED QTSTQKPKRE NKKVTLKAPP EAPIENGCSG QKSSSASCKQ TNPKTQRLFE  600
SFQENRYPDI STRENLAKEL QMTVKQVNNW FRNTRFSTSK TMSSKEDVEK LRTCKEREEG  660
KWEMKKVLRV YGGVLRLVRL LPADTRPYYA KYARENFVNY RDVDVSETPL DELFQRAYNH  720
SLWVLKKYSI DESAAKKLKE ICFE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162168RIKKKLR
2491498GRRKVERL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Primarily detected in root tissue.
Functional Description ? help Back to Top
Source Description
UniProtBinds only to large DNA fragments. Recognizes a DNA fragment carrying 8 copies of box7 motif of the light-induced cab-E promoter of Nicotiana plumbaginifolia. Also recognizes the box7m1 motif.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00083360001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145777.10.0PREDICTED: homeobox protein HAT3.1-like
RefseqXP_009145778.10.0PREDICTED: homeobox protein HAT3.1-like
RefseqXP_018514694.10.0PREDICTED: homeobox protein HAT3.1-like
SwissprotQ049960.0HAT31_ARATH; Homeobox protein HAT3.1
TrEMBLA0A078IA150.0A0A078IA15_BRANA; BnaA05g20560D protein
STRINGBra022429.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72702543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.11e-161Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]