PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00083353001 | ||||||||
Common Name | GSBRNA2T00083353001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 284aa MW: 32476.8 Da PI: 9.0469 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.9 | 2.3e-22 | 16 | 62 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +n+ n qvtfskRrng++KKA+EL++LC++e+ vi+fs+ k++ + GSBRNA2T00083353001 16 MKNENNLQVTFSKRRNGLFKKASELCTLCGVEIVVIVFSPGKKVFSF 62 58999***********************************9999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.072 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.8E-31 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.01E-32 | 8 | 78 | No hit | No description |
SuperFamily | SSF55455 | 7.72E-27 | 8 | 87 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-17 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.2E-24 | 16 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-17 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-17 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MVKKSKSRQK IEMVKMKNEN NLQVTFSKRR NGLFKKASEL CTLCGVEIVV IVFSPGKKVF 60 SFGHPNVDCV IDRFTNINPP HPRQYTNTQL SDARRNAIVQ DLNSHLTQVT EEFEIEKKRA 120 EDLKKKRKNS YISDNWWKEP IKELNLSQLT EFKCGLEKLR KTVTTEASKN FQTIVPRHNF 180 DGGSSNNATF GICDDYAGNI DTNLDLYNHQ RMVATNTFAC NHHNMMVPYH ITTPFGNIGN 240 GNIIEGFAAE YNQNPNHLCF KQEHISGCDH HSVHPPRFGH GYY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 2e-16 | 8 | 93 | 2 | 86 | Myocyte-specific enhancer factor 2A |
3kov_B | 2e-16 | 8 | 93 | 2 | 86 | Myocyte-specific enhancer factor 2A |
3kov_I | 2e-16 | 8 | 93 | 2 | 86 | Myocyte-specific enhancer factor 2A |
3kov_J | 2e-16 | 8 | 93 | 2 | 86 | Myocyte-specific enhancer factor 2A |
3p57_A | 2e-16 | 8 | 93 | 2 | 86 | Myocyte-specific enhancer factor 2A |
3p57_B | 2e-16 | 8 | 93 | 2 | 86 | Myocyte-specific enhancer factor 2A |
3p57_C | 2e-16 | 8 | 93 | 2 | 86 | Myocyte-specific enhancer factor 2A |
3p57_D | 2e-16 | 8 | 93 | 2 | 86 | Myocyte-specific enhancer factor 2A |
3p57_I | 2e-16 | 8 | 93 | 2 | 86 | Myocyte-specific enhancer factor 2A |
3p57_J | 2e-16 | 8 | 93 | 2 | 86 | Myocyte-specific enhancer factor 2A |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the syncytial endosperm development. {ECO:0000269|PubMed:18334668}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the endosperm but not in the embryo. Detected in young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:18334668}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00083353001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013724545.1 | 0.0 | agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 1e-102 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A078I5Q9 | 0.0 | A0A078I5Q9_BRANA; BnaA05g20520D protein | ||||
STRING | Bra022434.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-94 | AGAMOUS-like 62 |