PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00083208001
Common NameGSBRNA2T00083208001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 609aa    MW: 67579.6 Da    PI: 6.7992
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00083208001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.99.6e-104204571954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   n+yps +++  LA+++gL+ +qV++WF N R +
  GSBRNA2T00083208001 420 FEHflNPYPSDADKHLLARQTGLSRNQVSNWFINARVR 457
                          665569******************************88 PP
2BELL121.92.6e-39278349172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          +r e+q++k+kLls+leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda+  q+
  GSBRNA2T00083208001 278 DRIEHQRRKVKLLSMLEEVDRRYNHYCEQMQMVVNSFDQVMGYGAAIPYTTLAQKAMSRHFRCLKDAVLVQL 349
                          589*****************************************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.1E-81211347IPR006563POX domain
PfamPF075263.4E-51217345IPR006563POX domain
PROSITE profilePS5007112.86398461IPR001356Homeobox domain
CDDcd000869.30E-13401462No hitNo description
SMARTSM003891.1E-9401465IPR001356Homeobox domain
SuperFamilySSF466891.2E-17402468IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-28404467IPR009057Homeodomain-like
PfamPF059202.7E-18418457IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MSQDYHHPQG IFSFSNGFHR PSSSHQEEVE ESAVSGAPIP VYETAGMLSE MFSYPGGGSG  60
EILDHSTKQL LEQQNRHNNN NNSTLHMLLP NHHQGFGYAN EQQQHHFTWP SSSDHQSQGD  120
MIGTVHVEGG KGLSLSLSSS LEAAAAAKAE EYRSIYCAAV DGTSSSNTSA HHHHQFNQFK  180
TLLLDNSTSH HQAVGHFGSS SSSPMGASSS IGGIYTLRNS KYTKPAQELL EEFCSVGRGH  240
FKKNKLSRNN SNPNTSGGGG SSSSPGVAND NPPLSPADRI EHQRRKVKLL SMLEEVDRRY  300
NHYCEQMQMV VNSFDQVMGY GAAIPYTTLA QKAMSRHFRC LKDAVLVQLK RSCELLGEKE  360
TSGAASSGLT KGETPRLRLL EQSLRQQRAF HHMGMMEQEA WRPQRGLPER SVNILRAWLF  420
EHFLNPYPSD ADKHLLARQT GLSRNQVSNW FINARVRLWK PMVEEMYQQE AKEREEKELE  480
ENQKEDYHQT NNSSNNSDTK PNESNFTLVQ TITAQTPTTT MMTPTPHEND SSFLPSSVVT  540
AAPHSVSDAF TAATCQQDVS DHFQVNDGVI RFGTKQAGDV SLTLGLRHTG NMPDNKNPSF  600
SVRDFGDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-15407464158Homeobox protein Meis1
4xrs_B1e-15407464158Homeobox protein Meis1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.173980.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00083208001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3530920.0AF353092.1 Arabidopsis thaliana BEL1-like homeobox 4 (BLH4) mRNA, complete cds.
GenBankAY0581790.0AY058179.1 Arabidopsis thaliana At2g23760/F27L4.6 mRNA, complete cds.
GenBankAY1420190.0AY142019.1 Arabidopsis thaliana At2g23760/F27L4.6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013664100.10.0BEL1-like homeodomain protein 4
SwissprotQ94KL50.0BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBLA0A078I8950.0A0A078I895_BRANA; BnaA09g41850D protein
STRINGBra039212.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21662466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.30.0BEL1-like homeodomain 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]