PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00083143001
Common NameGSBRNA2T00083143001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 223aa    MW: 24577.8 Da    PI: 9.9663
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00083143001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-1486130347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +W++eE++l++ + ++ G+g+Wk I++++ k+Rt  q+ s+ qky
  GSBRNA2T00083143001  86 PWSEEEHKLFLLGLEKVGKGNWKGISQKFVKTRTSTQVASHAQKY 130
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-1077131IPR009057Homeodomain-like
PROSITE profilePS5129417.73679135IPR017930Myb domain
SuperFamilySSF466891.05E-1681136IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-1682133IPR006447Myb domain, plants
SMARTSM007176.1E-1083133IPR001005SANT/Myb domain
PfamPF002494.8E-1286130IPR001005SANT/Myb domain
CDDcd001676.94E-1086131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MADGSNTVAC GISKEIMLFG VRVVLDPMRK SVSLNNLSDY KQTDEILKIG GEDGDRQDKN  60
KTNSCYASAD EAVPVSSNRE RKRGVPWSEE EHKLFLLGLE KVGKGNWKGI SQKFVKTRTS  120
TQVASHAQKY FLRRSNLNRR RRRRSSLFDM TIPTVMPMEE VQENTSQPSS LVPEVNLVPF  180
TLQASPEPIS LSLSLALSNI NEPSSSSSSS SRHSAFNTIG VA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138143RRRRRR
Functional Description ? help Back to Top
Source Description
UniProtBinds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00083143001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009128066.11e-164PREDICTED: transcription factor MYB1R1-like
SwissprotQ2V9B09e-49MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLA0A078I8621e-162A0A078I862_BRANA; BnaA02g17000D protein
TrEMBLM4CVC21e-162M4CVC2_BRARP; Uncharacterized protein
STRINGBra008169.1-P1e-163(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24612669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74840.21e-76MYB_related family protein
Publications ? help Back to Top
  1. Shin D, et al.
    Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance.
    Plant Physiol., 2011. 155(1): p. 421-32
    [PMID:21030505]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]