PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00083078001
Common NameGSBRNA2T00083078001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family BES1
Protein Properties Length: 633aa    MW: 71056.6 Da    PI: 5.7703
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00083078001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822157.96.9e-49271621134
               DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasasp 90 
                          gg+g+++++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+V++AL+reAGw v++DGttyr++ + +    +++++ ++s+
  GSBRNA2T00083078001  27 GGKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVIAALAREAGWSVDADGTTYRQSHQSN----HVVQFPTRSI 112
                          6899******************************************************************999888....9999999999 PP

               DUF822  91 esslq.sslkssalas.pvesysaspksssfpspssldsislasa....a 134
                           s+l+ s+lk++a+a+  ++++++s++ ++ +sp+slds+ +a++    +
  GSBRNA2T00083078001 113 DSPLSsSTLKNCAKAAlECQQQHPSLRIDDNLSPVSLDSVVIAESdhpgN 162
                          9999988999999876268999******************9998755540 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.2E-4628175IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514458.72E-162195629IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.2E-171199629IPR013781Glycoside hydrolase, catalytic domain
PfamPF013734.8E-84205602IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.0E-55235249IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.0E-55256274IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.0E-55278299IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.0E-55371393IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.0E-55444463IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.0E-55478494IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.0E-55495506IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.0E-55513536IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.0E-55551573IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MGQADSDVNN GNITGETSSG GGGGGGGGKG KREREKEKER TKLRERHRRA ITSRMLAGLR  60
QYGNFPLPAR ADMNDVIAAL AREAGWSVDA DGTTYRQSHQ SNHVVQFPTR SIDSPLSSST  120
LKNCAKAALE CQQQHPSLRI DDNLSPVSLD SVVIAESDHP GNGRYAGASP IPSVGCVDAN  180
QLIQDVHSTE RRNDFTENFY VPVYAMLPVG VIDNFGQLVD PQGVRQELSY MKSLNVDGVV  240
IDCWWGIVEG WNPQKYVWSG YRELFNLIRD FKLKLQVVMA FHEYGGNASG NVMISLPQWV  300
LEIGKDNPDI FFTDREGRRS FECLNWSIDK ERVLHGRTGI EVYFDFMRSF RSEFDDLFVE  360
GMIAAIEIGL GASGELKYPS FPERMGWIYP GIGEFQCYDK YSQTSLLKEA KSRGFSFWGK  420
GPENAGQYNS QPHETGFFQE RGEYDSYYGR FFLNWYSQLL IGHAENVLSL ANLAFEDTKI  480
IVKIPAIYWS YKTASHAAEL TAGYYNPSNR DGYSPVFETL KKYSVTVKFV CPGPQMSSNE  540
HEEALADPEG LSWQVVNAAW DKGLLIGGEN AITCFDRESC MRLIEMAKPR NHPDSNHFSF  600
FTYRQPSPLV QGSTCFADLD YFIKRMHGDL QR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-12020062911444Beta-amylase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00083078001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1171400.0AK117140.1 Arabidopsis thaliana At5g45300 mRNA for putative beta-amylase, complete cds, clone: RAFL16-68-D16.
GenBankBT0064820.0BT006482.1 Arabidopsis thaliana At5g45300 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013721726.20.0beta-amylase 8-like isoform X1
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A078JUD50.0A0A078JUD5_BRANA; Beta-amylase
STRINGBo2g127050.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108882832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]