PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00082979001
Common NameGSBRNA2T00082979001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 294aa    MW: 33017.2 Da    PI: 6.3008
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00082979001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.71.7e-072432752254
                          SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           +yp+++++++L +++gL+ +q+ +WF N+R +
  GSBRNA2T00082979001 243 WPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 275
                          58*****************************87 PP
2ELK26.31.7e-09196217122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELK +L++++++++ ++++E++
  GSBRNA2T00082979001 196 ELKIELKQGFKSRIEDVREEIM 217
                          9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.2E-152872IPR005540KNOX1
PfamPF037901.4E-143070IPR005540KNOX1
SMARTSM012563.6E-2582137IPR005541KNOX2
PfamPF037913.4E-1986136IPR005541KNOX2
SMARTSM011880.0086196217IPR005539ELK domain
PROSITE profilePS512139.132196216IPR005539ELK domain
PROSITE profilePS5007111.839216279IPR001356Homeobox domain
SuperFamilySSF466892.35E-16218282IPR009057Homeodomain-like
SMARTSM003895.3E-11218283IPR001356Homeobox domain
CDDcd000861.38E-12219280No hitNo description
Gene3DG3DSA:1.10.10.604.9E-25223280IPR009057Homeodomain-like
PfamPF059203.3E-18236275IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MEEAALGMIG ATVGGGDGDE VLVAEQNRQM KGEIASHTMC EQLLAAHVAC LRVATPIDQL  60
PIIEAQLSHS EHLLRSYAST AVGFSHHDRH ELDNFLAQYV MVLCSFKEQL QQHVRVHAVE  120
AVMACREIEN NLHSLTGATL GEGSGATMSE DEDDLHMDLS SDNSGVDFSG GHDMTGFGPL  180
LPTESERSLM ERVRQELKIE LKQGFKSRIE DVREEIMRKR RAGKLPGDTT TVLKNWWQQH  240
CKWPYPTEDD KAKLVEETGL QLKQINNWFI NQRKRNWHSN SHSLTSLKSK RKH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A3e-13219283872Homeobox protein PKNOX1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00082979001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZ290730.0Z29073.1 B.napus hd1 mRNA for homeodomain-containing protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013661601.10.0homeobox protein HD1-like isoform X1
SwissprotQ9FPQ80.0KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A078I9X10.0A0A078I9X1_BRANA; BnaA09g12980D protein
STRINGBra027006.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.10.0KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  5. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]