PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00082812001 | ||||||||
Common Name | GSBRNA2T00082812001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 320aa MW: 35945.9 Da PI: 6.6997 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.3 | 1.5e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+ +v+++G g W+t + + g++R++k+c++rw +yl GSBRNA2T00082812001 14 KGAWTQEEDHKLIAYVQLHGEGGWRTLPDKAGLRRCGKSCRLRWANYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 57.9 | 2.3e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +++eE++ ++++++ +G++ W++Iar+++ gRt++++k++w+++ GSBRNA2T00082812001 67 RGEFSEEEEDSIIRLHAIHGNK-WSAIARRLP-GRTDNEIKNHWNTH 111 899*******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.8E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.373 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.8E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.37E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.063 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.9E-27 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.5E-17 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.84E-13 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MVRTPCCRAE GLKKGAWTQE EDHKLIAYVQ LHGEGGWRTL PDKAGLRRCG KSCRLRWANY 60 LRPDIKRGEF SEEEEDSIIR LHAIHGNKWS AIARRLPGRT DNEIKNHWNT HIKKRLVKKC 120 IDPLTHKSLN GKSSDHTETP PDKSSVHQDD DDQKSNKNNA LGSLSARFLN RVANRFGKRI 180 NHSVLSDIIN GSGAPFTSHT TPTTSASECE KSSSSFSTPN SSNLLINENM VLDATSLSSS 240 TFSSDTSDPS VYDHIFDDLE DMTTFSSRFL NDVVSHDDVD FLMLDESCLE NTSFMRELTR 300 ILQEDKIETT TFSDSRVTP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-27 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in trichomes. {ECO:0000269|PubMed:23115560}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in glucosinolates biosynthesis. {ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00082812001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ670120 | 0.0 | KJ670120.1 Brassica napus MYB transcription factor 122 (MYB122.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013619075.1 | 0.0 | PREDICTED: transcription factor MYB122 isoform X1 | ||||
Swissprot | Q9C9C8 | 1e-157 | MY122_ARATH; Transcription factor MYB122 | ||||
TrEMBL | A0A078I6V7 | 0.0 | A0A078I6V7_BRANA; BnaC02g22630D protein | ||||
STRING | Bo2g080900.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74080.1 | 1e-143 | myb domain protein 122 |