PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00082787001
Common NameGSBRNA2T00082787001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 121aa    MW: 14131.9 Da    PI: 9.6545
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00082787001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.74.4e-124095257
                         XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57
                          + k+ rrk +NRe+ArrsR RK+  + eL      L +eNk L +el++ ++ ++
  GSBRNA2T00082787001 40 DDEKKRRRKVSNRESARRSRMRKRRHLNELWSMLVHLINENKCLVDELSRANEGYE 95
                         56799********************************************9988766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.5E-934115No hitNo description
SMARTSM003381.0E-1239103IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.50741104IPR004827Basic-leucine zipper domain
PfamPF001704.1E-94295IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.84E-104392No hitNo description
PROSITE patternPS0003604661IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MDGFVYNLPG ANPNQHFFNN QVPLVNLSAT SDESNRSAED DEKKRRRKVS NRESARRSRM  60
RKRRHLNELW SMLVHLINEN KCLVDELSRA NEGYEDVVEE NKKLREENSK LRKMIGEIGF  120
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14247KKRRRK
24563RRKVSNRESARRSRMRKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00082787001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127682.14e-83PREDICTED: basic leucine zipper 8
SwissprotQ9CA469e-56BZIP8_ARATH; Basic leucine zipper 8
TrEMBLA0A078I9M21e-81A0A078I9M2_BRANA; BnaA02g14100D protein
TrEMBLA0A3P6AV881e-81A0A3P6AV88_BRACM; Uncharacterized protein
TrEMBLM4FB751e-81M4FB75_BRARP; Uncharacterized protein
STRINGBra038341.1-P2e-82(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150351619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68880.11e-46basic leucine-zipper 8
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]