PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00082777001

Common Name

GSBRNA2T00082777001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 454aa MW: 49343.5 Da PI: 5.9659

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00082777001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.5	5.5e-09	275	323	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq GSBRNA2T00082777001 275 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 323 58***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.36E-17	270	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.18E-11	270	327	No hit	No description
PROSITE profile	PS50888	15.478	272	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.6E-17	273	340	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.5E-6	275	323	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-10	278	328	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MDVNEKEEFS GEKRNTGYDS ADNHPSDWRI SGSNPVFAPP FGSYSTENLI TASCSPSQMM 60 DSFGQTLWYD PTNVQAVGYG GFSGGHPSSS SSSCLRGNMD RSLEMGWSMP NLMAQFPADS 120 GFIERAARFS LFSDMVNQPL GNPESVGLFL QGQCPSSEVN VGVATTAVRD PNVRSSELVS 180 KPNVSEDTRS SGQKGGETSS KDSKKRKRNR QNSEADQSHK TEEEAENNGD KKGSDEQSPN 240 SPGNKTNSGK QQGKQTSDPK DGYIHVRARR GQATNSHSLA ERVRREKISE RMKFLQDLVP 300 GCNKVTGKAV MLDEIINYVQ SLQRQVEFLS MKLATVNPQM DFNLEALLAK DVRELQLRGG 360 SSSATPFPQN MSMVYPPLPH GFMQQTLSSM GRTISSPLSP MNGGYKRQET NGWEGDLQNV 420 IHINYGAGDV PSDPEAAATA TASLPSSNMK VEP*

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MDVNEKEEFS GEKRNTGYDS ADNHPSDWRI SGSNPVFAPP FGSYSTENLI TASCSPSQMM  60
DSFGQTLWYD PTNVQAVGYG GFSGGHPSSS SSSCLRGNMD RSLEMGWSMP NLMAQFPADS  120
GFIERAARFS LFSDMVNQPL GNPESVGLFL QGQCPSSEVN VGVATTAVRD PNVRSSELVS  180
KPNVSEDTRS SGQKGGETSS KDSKKRKRNR QNSEADQSHK TEEEAENNGD KKGSDEQSPN  240
SPGNKTNSGK QQGKQTSDPK DGYIHVRARR GQATNSHSLA ERVRREKISE RMKFLQDLVP  300
GCNKVTGKAV MLDEIINYVQ SLQRQVEFLS MKLATVNPQM DFNLEALLAK DVRELQLRGG  360
SSSATPFPQN MSMVYPPLPH GFMQQTLSSM GRTISSPLSP MNGGYKRQET NGWEGDLQNV  420
IHINYGAGDV PSDPEAAATA TASLPSSNMK VEP*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00082777001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009127689.1	0.0	PREDICTED: transcription factor bHLH49-like
Swissprot	Q9CAA9	0.0	BH049_ARATH; Transcription factor bHLH49
TrEMBL	A0A078I4M7	0.0	A0A078I4M7_BRANA; BnaA02g14180D protein
STRING	Bo2g062450.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5900	25	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.2	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]