PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00082683001 | ||||||||
Common Name | GSBRNA2T00082683001, LOC106439888 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 243aa MW: 26073.1 Da PI: 10.1055 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 128.5 | 6.6e-40 | 32 | 206 | 2 | 121 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg... 88 a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++a++ ss++ + s++ GSBRNA2T00082683001 32 AVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTAVRGSSTTISTSANctl 121 789******************************************************************999777777777766666788 PP TCP 89 ....................................................kaaksaakskksqksaasalnlakesrakarar 121 +++ + ++++++q+++a+al ++++++++a + GSBRNA2T00082683001 122 sspldhkpfilgkrlredsgggkeemgsfatpagfwavparpdfgqvwsfasHQEMFLQQQQQQQQQPAAALFVHQQQQQQAAMG 206 888999999999999999999****************************997666666677778888887787777776666544 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 27.892 | 38 | 92 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 2.1E-33 | 38 | 197 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 243 aa Download sequence Send to blast |
MSNNNNDGVM ISNGSLIEHQ QNQKQSSDGA LAVKKPPAKD RHSKVDGRGR RIRMPIICAA 60 RVFQLTRELG HKSDGQTIEW LLRQAEPSII AATGTGTTPA SFSTAVRGSS TTISTSANCT 120 LSSPLDHKPF ILGKRLREDS GGGKEEMGSF ATPAGFWAVP ARPDFGQVWS FASHQEMFLQ 180 QQQQQQQQPA AALFVHQQQQ QQAAMGEASA ARVGNYLPGH LNLLASLSGG APGSGRREDD 240 QR* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bna.13957 | 3e-74 | seed |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00082683001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013736882.1 | 1e-179 | transcription factor TCP7 | ||||
Swissprot | Q9FMX2 | 1e-103 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A078I4H3 | 1e-178 | A0A078I4H3_BRANA; BnaC02g42220D protein | ||||
STRING | Bo7g097790.1 | 1e-163 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1782 | 26 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G23280.1 | 1e-63 | TCP family protein |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 106439888 |
Publications ? help Back to Top | |||
---|---|---|---|
|