PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00082557001
Common NameGSBRNA2T00082557001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 269aa    MW: 30994.2 Da    PI: 6.4604
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00082557001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.74e-1870117956
                          HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           eq+++Le+ Fe  ++++ e++ +LAk lg++ rq+ +WFqNrRa++k
  GSBRNA2T00082557001  70 LEQVKVLEKSFELGNKLDPERKIQLAKALGMQPRQIAIWFQNRRARWK 117
                          58*********************************************9 PP
2HD-ZIP_I/II125.72.1e-4063155193
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ekk+rl  eqvk+LE+sFe  +kL+perK +la++Lg+qprq+a+WFqnrRAR+kt+qlE+dy++Lk+++d+lk++n++L +++++L +e
  GSBRNA2T00082557001  63 EKKKRLPLEQVKVLEKSFELGNKLDPERKIQLAKALGMQPRQIAIWFQNRRARWKTRQLERDYDSLKKQFDSLKSDNDSLLAHNKKLLAE 152
                          69*************************************************************************************999 PP

          HD-ZIP_I/II  91 lke 93 
                          +++
  GSBRNA2T00082557001 153 VMS 155
                          875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.12E-1958121IPR009057Homeodomain-like
SMARTSM003899.7E-1962123IPR001356Homeobox domain
PROSITE profilePS5007116.08263119IPR001356Homeobox domain
CDDcd000864.99E-1764120No hitNo description
Gene3DG3DSA:1.10.10.602.3E-1967127IPR009057Homeodomain-like
PfamPF000462.4E-1570117IPR001356Homeobox domain
PRINTSPR000312.8E-59099IPR000047Helix-turn-helix motif
PROSITE patternPS00027094117IPR017970Homeobox, conserved site
PRINTSPR000312.8E-599115IPR000047Helix-turn-helix motif
PfamPF021831.9E-16120159IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
FQQLHEDISP DQLPSCLPPH PFNGGGNYMM NRSMSLTNVR DDPHQSVDEE NLSDDGSHMM  60
LGEKKKRLPL EQVKVLEKSF ELGNKLDPER KIQLAKALGM QPRQIAIWFQ NRRARWKTRQ  120
LERDYDSLKK QFDSLKSDND SLLAHNKKLL AEVMSLKNKD YNEASIIKRE AEASWSNNGS  180
TENSSDINLE IPRETTTTHV NTIKNLFPSS IPSSTHHQDH HGDHHHQNNE MVQEESFCNM  240
FNGIDETTSA GYWGWSDPNY NHHHHQFN*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed 3 day after germination (DAG) in first rosette leaf primordia around the veins in the apical part of the leaf and close to the midvein in the basal part of the leaf. At later stage, expressed in new forming veins, and veins and fascicular cambium of mature leaves. {ECO:0000269|PubMed:12644682}.
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00322DAPTransfer from AT3G01220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00082557001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:12644682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584528.10.0PREDICTED: homeobox-leucine zipper protein ATHB-20-like
SwissprotQ8LAT01e-157ATB20_ARATH; Homeobox-leucine zipper protein ATHB-20
TrEMBLA0A078JQF30.0A0A078JQF3_BRANA; BnaCnng61510D protein (Fragment)
STRINGBo5g156340.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30952666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01220.11e-154homeobox protein 20
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]