PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00082469001
Common NameGSBRNA2T00082469001, LOC106452604
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 785aa    MW: 85890 Da    PI: 6.8148
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00082469001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox629.1e-20100155156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ +++t++q++ Le++F+++ +p++++r +L++kl+L+ rqVk+WFqNrR+++k
  GSBRNA2T00082469001 100 KKRYHRHTAKQIQDLESVFKECAHPDEKQRLDLSRKLNLDPRQVKFWFQNRRTQMK 155
                          688999***********************************************999 PP
2START186.11.9e-583005192206
                          HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
                START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                          la++a++elvk+a+  ep+Wv+ss    e++n++e+ ++f++  +     + +ea++++g+v+ ++  lve+l+d+  +W e+++    +
  GSBRNA2T00082469001 300 LALAAMEELVKMAQRHEPLWVRSSetgfEMLNKEEYDTSFSRVVGpkqdgFVSEASKETGNVIINSLALVETLMDSE-RWAEMFPsmisR 388
                          6899************************88888888888866544888999**************************.*******9999* PP

                          EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS
                START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161
                           +t+e issg      gal+lm aelq+lsplvp R + f+R+++q+ +g+w++vdvS+ds ++ + sss+ R   lpSg+l+++++ng+
  GSBRNA2T00082469001 389 TSTTEIISSGmggtrnGALHLMHAELQLLSPLVPvRQVSFLRFCKQHAEGVWAVVDVSIDSIREGS-SSSCRR---LPSGCLVQDMANGY 474
                          *****************************************************************9.777766...************** PP

                          EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          skvtw+eh+++++  +h l+r+l++ gla+ga++w+a+lqrqce+
  GSBRNA2T00082469001 475 SKVTWIEHTEYDETRIHRLYRPLLSCGLAFGAQRWMAALQRQCEC 519
                          *******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-2186157IPR009057Homeodomain-like
SuperFamilySSF466892.34E-1988157IPR009057Homeodomain-like
PROSITE profilePS5007117.24897157IPR001356Homeobox domain
SMARTSM003896.7E-1898161IPR001356Homeobox domain
CDDcd000866.17E-17100157No hitNo description
PfamPF000462.3E-17100155IPR001356Homeobox domain
PROSITE patternPS000270132155IPR017970Homeobox, conserved site
PROSITE profilePS5084839.942290522IPR002913START domain
SuperFamilySSF559614.94E-30293519No hitNo description
CDDcd088752.52E-112294518No hitNo description
SMARTSM002341.4E-45299519IPR002913START domain
PfamPF018523.5E-50300519IPR002913START domain
SuperFamilySSF559612.06E-17548776No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 785 aa     Download sequence    Send to blast
MNFNGYLGDG SSGDRISDVP YSDHVSFSAA ATMPHSRPFS SNGLSLGLQT NGVNGETFET  60
NVTRNKSRGG EDAESRSESD NAEAASGDDL ETGDKPPRKK KRYHRHTAKQ IQDLESVFKE  120
CAHPDEKQRL DLSRKLNLDP RQVKFWFQNR RTQMKTQIER HENALLRQEN DKLRAENMSV  180
REAMRNPMCS NCGGPAVLGE VSMEEQHLRI ENSRLKDELD RVCALTGKFL GRSTSGSHHV  240
PDSSLVLGVG VGSGGGFSLS SPSLPQASPR FEISNGTGLA TVNRQRPVSD FDQRSRYLDL  300
ALAAMEELVK MAQRHEPLWV RSSETGFEML NKEEYDTSFS RVVGPKQDGF VSEASKETGN  360
VIINSLALVE TLMDSERWAE MFPSMISRTS TTEIISSGMG GTRNGALHLM HAELQLLSPL  420
VPVRQVSFLR FCKQHAEGVW AVVDVSIDSI REGSSSSCRR LPSGCLVQDM ANGYSKVTWI  480
EHTEYDETRI HRLYRPLLSC GLAFGAQRWM AALQRQCECL TILMSSTVSP SRSPTPISCN  540
GRKSMLKLAK RMTDNFCGGV CASSLQKWSK LNVGNVDEDV RIMTRKSVND PGEPPGIVLN  600
AATSVWMPVS PKRLFDFLGN ERLRSEWDIL SNGGPMQEMA HIAKGHDHSN SVSLLRATAI  660
NANQSSMLIL QETSIDAVGA VVVYAPVDIP AMQAVMNGGD SAYVALLPSG FAILPSAPQR  720
SEERNGNGSG GCMEEGGSLL TVAFQILVNS LPTAKLTVES VETVNNLISC TVQKIKAALH  780
CDSN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.57780.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes forming at the base of young leaves, in endodermal cell lines around emergent lateral roots and in the epidermal layer of the stamen filament. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00418DAPTransfer from AT3G61150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00082469001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1824900.0DQ182490.1 Brassica napus baby boom interacting protein 2 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013750213.10.0homeobox-leucine zipper protein HDG1 isoform X1
RefseqXP_022552654.10.0homeobox-leucine zipper protein HDG1 isoform X2
SwissprotQ9M2E80.0HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBLA0A078I8F20.0A0A078I8F2_BRANA; BnaCnng13490D protein
STRINGBo6g077480.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]